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NDL2 N-MYC downregulated-like 2 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 831051, updated on 18-Sep-2024

Summary

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Official Symbol
NDL2
Official Full Name
N-MYC downregulated-like 2
Primary source
TAIR:AT5G11790
Locus tag
AT5G11790
See related
Araport:AT5G11790
Gene type
protein coding
RNA name
miRNA
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
N-MYC downregulated-like 2; T22P22.180; T22P22_180
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Genomic context

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See NDL2 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
11
Sequence:
Chromosome: 5; NC_003076.8 (3799408..3803216)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene NADH-ubiquinone oxidoreductase 20 kDa subunit Neighboring gene SNF2 domain protein Neighboring gene microRNA ath-MIR5629 precursor Neighboring gene K+ efflux antiporter 6 Neighboring gene rhomboid family protein Neighboring gene Plant self-incompatibility protein S1 family

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Arabidopsis NDL-AGB1 modules Play Role in Abiotic Stress and Hormonal Responses Along with Their Specific Functions. Katiyar A, et al. Int J Mol Sci, 2019 Sep 24. PMID 31554237, Free PMC Article
  2. Arabidopsis N-MYC DOWNREGULATED-LIKE1, a positive regulator of auxin transport in a G protein-mediated pathway. Mudgil Y, et al. Plant Cell, 2009 Nov. PMID 19948787, Free PMC Article
  3. Proteome-wide screens for small ubiquitin-like modifier (SUMO) substrates identify Arabidopsis proteins implicated in diverse biological processes. Elrouby N, et al. Proc Natl Acad Sci U S A, 2010 Oct 5. PMID 20855607, Free PMC Article
  4. Arabidopsis G-protein interactome reveals connections to cell wall carbohydrates and morphogenesis. Klopffleisch K, et al. Mol Syst Biol, 2011 Sep 27. PMID 21952135, Free PMC Article
  5. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

  • mature miRNA accession:MIMAT0022388
NM_121217.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of auxin polar transport IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within response to abscisic acid IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within response to cold IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within response to jasmonic acid IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
N-MYC downregulated-like 2
NP_568251.1
  • N-MYC downregulated-like 2 (NDL2); CONTAINS InterPro DOMAIN/s: Pollen specific protein SF21 (InterPro:IPR015511), Ndr (InterPro:IPR004142); BEST Arabidopsis thaliana protein match is: N-MYC downregulated-like 1 (TAIR:AT5G56750.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    3799408..3803216
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001343214.1 → NP_001332289.1  N-MYC downregulated-like 2 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BGH7, A0A7G2FA10
    Conserved Domains (1) summary
    cl21494
    Location:1 → 251
    Abhydrolase; alpha/beta hydrolases

  2. NM_121217.3 → NP_568251.1  N-MYC downregulated-like 2 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_568251.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    C0Z3F8, Q9ASU8, Q9LYF2
    UniProtKB/TrEMBL
    A0A178UTF2, A0A5S9Y414, A0A7G2FA10
    Conserved Domains (1) summary
    cl21494
    Location:21 → 305
    Abhydrolase; alpha/beta hydrolases
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9ASU8.1

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