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Alkaline phytoceramidase (aPHC) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 831060, updated on 18-Sep-2024

Summary

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Official Full Name
Alkaline phytoceramidase (aPHC)
Primary source
TAIR:AT5G11870
Locus tag
AT5G11870
See related
Araport:AT5G11870
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F14F18.40; F14F18_40
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Genomic context

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Location:
chromosome: 5
Exon count:
7
Sequence:
Chromosome: 5; NC_003076.8 (3825420..3827573)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Protein kinase superfamily protein Neighboring gene SCP1-like small phosphatase 5 Neighboring gene Pyridoxal-dependent decarboxylase family protein Neighboring gene harpin-induced protein Neighboring gene Translation initiation factor SUI1 family protein Neighboring gene alpha/beta-Hydrolases superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Arabidopsis glutaredoxin S17 and its partner, the nuclear factor Y subunit C11/negative cofactor 2α, contribute to maintenance of the shoot apical meristem under long-day photoperiod. Knuesting J, et al. Plant Physiol, 2015 Apr. PMID 25699589, Free PMC Article
  2. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
  3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_121225.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Alkaline phytoceramidase (aPHC)
NP_001190292.1
  • Alkaline phytoceramidase (aPHC); FUNCTIONS IN: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; INVOLVED IN: ceramide metabolic process; LOCATED IN: integral to membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Ceramidase (InterPro:IPR008901); BEST Arabidopsis thaliana protein match is: senescence associated gene 18 (TAIR:AT1G71190.1).
NP_196748.1
  • Alkaline phytoceramidase (aPHC); FUNCTIONS IN: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; INVOLVED IN: ceramide metabolic process; LOCATED IN: integral to membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Ceramidase (InterPro:IPR008901); BEST Arabidopsis thaliana protein match is: senescence associated gene 18 (TAIR:AT1G71190.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    3825420..3827573
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001203363.2 → NP_001190292.1  Alkaline phytoceramidase (aPHC) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001190292.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UPH9, A0A654G0Q8, F4JZD5

  2. NM_121225.4 → NP_196748.1  Alkaline phytoceramidase (aPHC) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_196748.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UPH9, Q9LYI6
Nucleotide Protein
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