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TPR16 Heat shock protein DnaJ with tetratricopeptide repeat-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 831118, updated on 18-Sep-2024

Summary

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Official Symbol
TPR16
Official Full Name
Heat shock protein DnaJ with tetratricopeptide repeat-containing protein
Primary source
TAIR:AT5G12430
Locus tag
AT5G12430
See related
Araport:AT5G12430
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
DJC31; DNA J protein C31; tetratricopeptide repeat 16
Summary
Encodes one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010, Pubmed ID: 20856808) with potential to interact with Hsp90/Hsp70 as co-chaperones.
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Genomic context

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See TPR16 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
11
Sequence:
Chromosome: 5; NC_003076.8 (4027974..4034682, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene THUMP domain-containing protein Neighboring gene O-acyltransferase (WSD1-like) family protein Neighboring gene CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein Neighboring gene FBD-like domain family protein Neighboring gene fringe-like protein (DUF604)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The TPR- and J-domain-containing proteins DJC31 and DJC62 are involved in abiotic stress responses in Arabidopsis thaliana. Dittmer S, et al. J Cell Sci, 2021 Oct 1. PMID 34515300
  2. Evolution of chloroplast J proteins. Chiu CC, et al. PLoS One, 2013. PMID 23894646, Free PMC Article
  3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The TPR- and J-domain-containing proteins DJC31 and DJC62 are involved in abiotic stress responses in Arabidopsis thaliana.
    Title: The TPR- and J-domain-containing proteins DJC31 and DJC62 are involved in abiotic stress responses in Arabidopsis thaliana.
Submit: New GeneRIF Correction

General gene information

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NM_121281.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in chloroplast IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Heat shock protein DnaJ with tetratricopeptide repeat-containing protein
NP_568276.2
  • Heat shock protein DnaJ with tetratricopeptide repeat; FUNCTIONS IN: heat shock protein binding, binding; INVOLVED IN: protein folding; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: Heat shock protein DnaJ with tetratricopeptide repeat (TAIR:AT2G41520.1); Has 27844 Blast hits to 24585 proteins in 3132 species: Archae - 222; Bacteria - 9738; Metazoa - 5941; Fungi - 3019; Plants - 3250; Viruses - 11; Other Eukaryotes - 5663 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    4027974..4034682 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_121281.3 → NP_568276.2  Heat shock protein DnaJ with tetratricopeptide repeat-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_568276.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UJH5, A0A5S9Y3J5, F4K0Y5
    Conserved Domains (5) summary
    smart00028
    Location:917 → 950
    TPR; Tetratricopeptide repeats
    sd00006
    Location:882 → 907
    TPR; TPR repeat [structural motif]
    pfam00226
    Location:1024 → 1106
    DnaJ; DnaJ domain
    pfam12895
    Location:759 → 850
    ANAPC3; Anaphase-promoting complex, cyclosome, subunit 3
    pfam13414
    Location:882 → 947
    TPR_11; TPR repeat
Nucleotide Protein
Heading Accession and Version

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