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fringe-like protein (DUF604) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 831121, updated on 18-Sep-2024

Summary

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Official Full Name
fringe-like protein (DUF604)
Primary source
TAIR:AT5G12460
Locus tag
AT5G12460
See related
Araport:AT5G12460
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 5
Exon count:
3
Sequence:
Chromosome: 5; NC_003076.8 (4043057..4044583)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Heat shock protein DnaJ with tetratricopeptide repeat-containing protein Neighboring gene CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein Neighboring gene FBD-like domain family protein Neighboring gene UvrABC system C protein, putative (DUF3411) Neighboring gene calmodulin-domain protein kinase 7

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by TAIR

Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
fringe-like protein (DUF604)
NP_568279.2
  • Protein of unknown function (DUF604); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF604 (InterPro:IPR006740); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF604) (TAIR:AT2G37730.1); Has 562 Blast hits to 553 proteins in 90 species: Archae - 0; Bacteria - 0; Metazoa - 108; Fungi - 170; Plants - 273; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    4043057..4044583
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_121284.2 → NP_568279.2  fringe-like protein (DUF604) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_568279.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UHF3, A0A5S9Y490, Q1PDX3
    Conserved Domains (1) summary
    cl21608
    Location:167 → 416
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
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