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TRA2 Aldolase-type TIM barrel family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 831183, updated on 18-Sep-2024

Summary

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Official Symbol
TRA2
Official Full Name
Aldolase-type TIM barrel family protein
Primary source
TAIR:AT5G13420
Locus tag
AT5G13420
See related
Araport:AT5G13420
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T22N19.70; T22N19_70; transaldolase 2
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Genomic context

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See TRA2 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
7
Sequence:
Chromosome: 5; NC_003076.8 (4301792..4304315, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene no exine formation 1 Neighboring gene Major facilitator superfamily protein Neighboring gene FKBP-like peptidyl-prolyl cis-trans isomerase family protein Neighboring gene Ubiquinol-cytochrome C reductase iron-sulfur subunit Neighboring gene Ubiquinol-cytochrome C reductase iron-sulfur subunit Neighboring gene delta subunit of Mt ATP synthase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. GSM2, a transaldolase, contributes to reactive oxygen species homeostasis in Arabidopsis. Zheng M, et al. Plant Mol Biol, 2020 Sep. PMID 32564178
  2. A systems biology view of responses to lignin biosynthesis perturbations in Arabidopsis. Vanholme R, et al. Plant Cell, 2012 Sep. PMID 23012438, Free PMC Article
  3. The Extra-Pathway Interactome of the TCA Cycle: Expected and Unexpected Metabolic Interactions. Zhang Y, et al. Plant Physiol, 2018 Jul. PMID 29794018, Free PMC Article
  4. The oligomeric stromal proteome of Arabidopsis thaliana chloroplasts. Peltier JB, et al. Mol Cell Proteomics, 2006 Jan. PMID 16207701
  5. Targeted interactomics reveals a complex core cell cycle machinery in Arabidopsis thaliana. Van Leene J, et al. Mol Syst Biol, 2010 Aug 10. PMID 20706207, Free PMC Article

See all (13) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_121345.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables transaldolase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within lignin biosynthetic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in pentose-phosphate shunt IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within response to glucose IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast HDA PubMed 
located_in chloroplast IDA
Inferred from Direct Assay
more info
 PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in chloroplast stroma HDA PubMed 
NOT located_in cytosol RCA
inferred from Reviewed Computational Analysis
more info
 PubMed 
located_in mitochondrion HDA PubMed 
located_in plastid HDA PubMed 

General protein information

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Preferred Names
Aldolase-type TIM barrel family protein
NP_196846.1
  • Aldolase-type TIM barrel family protein; FUNCTIONS IN: catalytic activity, transaldolase activity; INVOLVED IN: response to cadmium ion; LOCATED IN: mitochondrion, chloroplast stroma, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transaldolase subfamily (InterPro:IPR004732), Aldolase-type TIM barrel (InterPro:IPR013785), Transaldolase, active site (InterPro:IPR018225), Transaldolase, bacterial/plant type (InterPro:IPR014634), Transaldolase (InterPro:IPR001585); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    4301792..4304315 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_121345.3 → NP_196846.1  Aldolase-type TIM barrel family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_196846.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UD24, A0A654G0W2, Q9LYR4
    Conserved Domains (1) summary
    PRK03343
    Location:77 → 434
    PRK03343; transaldolase; Validated
Nucleotide Protein
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