U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ATP5 delta subunit of Mt ATP synthase [ Arabidopsis thaliana (thale cress) ]

Gene ID: 831186, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
ATP5
Official Full Name
delta subunit of Mt ATP synthase
Primary source
TAIR:AT5G13450
Locus tag
AT5G13450
See related
Araport:AT5G13450
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
delta subunit of Mt ATP synthase
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See ATP5 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
6
Sequence:
Chromosome: 5; NC_003076.8 (4310254..4312066, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Aldolase-type TIM barrel family protein Neighboring gene Ubiquinol-cytochrome C reductase iron-sulfur subunit Neighboring gene Ubiquinol-cytochrome C reductase iron-sulfur subunit Neighboring gene IQ-domain 11 Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Antisense expression of mitochondrial ATP synthase subunits OSCP (ATP5) and gamma (ATP3) alters leaf morphology, metabolism and gene expression in Arabidopsis. Robison MM, et al. Plant Cell Physiol, 2009 Oct. PMID 19748911
  2. The products of the mitochondrial orf25 and orfB genes are FO components in the plant F1FO ATP synthase. Heazlewood JL, et al. FEBS Lett, 2003 Apr 10. PMID 12681508
  3. Proteomic approach to identify novel mitochondrial proteins in Arabidopsis. Kruft V, et al. Plant Physiol, 2001 Dec. PMID 11743114, Free PMC Article
  4. The Extra-Pathway Interactome of the TCA Cycle: Expected and Unexpected Metabolic Interactions. Zhang Y, et al. Plant Physiol, 2018 Jul. PMID 29794018, Free PMC Article
  5. Resolving and identifying protein components of plant mitochondrial respiratory complexes using three dimensions of gel electrophoresis. Meyer EH, et al. J Proteome Res, 2008 Feb. PMID 18189341

See all (17) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Aantisense expression of atp5 reduces levels of ATP5 protein, alters total cellular ATP levels, impairs growth and alters leaf morphology.
    Title: Antisense expression of mitochondrial ATP synthase subunits OSCP (ATP5) and gamma (ATP3) alters leaf morphology, metabolism and gene expression in Arabidopsis.
Submit: New GeneRIF Correction

Pathways from PubChem

Go to the top of the page

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help
NM_001036798.1
NM_121348.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables cobalt ion binding HDA PubMed 
enables proton-transporting ATP synthase activity, rotational mechanism IEA
Inferred from Electronic Annotation
more info
  
enables proton-transporting ATP synthase activity, rotational mechanism ISS
Inferred from Sequence or Structural Similarity
more info
  
enables zinc ion binding HDA PubMed 
Process Evidence Code Pubs
involved_in proton motive force-driven ATP synthesis IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
NOT located_in Golgi apparatus RCA
inferred from Reviewed Computational Analysis
more info
 PubMed 
located_in chloroplast HDA PubMed 
located_in mitochondrion HDA PubMed 
located_in mitochondrion IDA
Inferred from Direct Assay
more info
 PubMed 
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  
located_in plastid HDA PubMed 
part_of proton-transporting ATP synthase complex HDA PubMed 
part_of proton-transporting ATP synthase complex, catalytic core F(1) ISS
Inferred from Sequence or Structural Similarity
more info
  

General protein information

Go to the top of the page Help
Preferred Names
delta subunit of Mt ATP synthase
NP_001031875.1
  • delta subunit of Mt ATP synthase (ATP5); FUNCTIONS IN: hydrogen ion transporting ATP synthase activity, rotational mechanism, cobalt ion binding, zinc ion binding; INVOLVED IN: ATP synthesis coupled proton transport; LOCATED IN: mitochondrion, chloroplast, plasma membrane, membrane, mitochondrial proton-transporting ATP synthase complex, catalytic core F(1); EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, F1 complex, OSCP/delta subunit (InterPro:IPR000711); Has 5632 Blast hits to 5632 proteins in 1944 species: Archae - 0; Bacteria - 3697; Metazoa - 218; Fungi - 134; Plants - 154; Viruses - 0; Other Eukaryotes - 1429 (source: NCBI BLink).
NP_196849.1
  • delta subunit of Mt ATP synthase (ATP5); FUNCTIONS IN: hydrogen ion transporting ATP synthase activity, rotational mechanism, cobalt ion binding, zinc ion binding; INVOLVED IN: ATP synthesis coupled proton transport; LOCATED IN: mitochondrion, chloroplast, plasma membrane, membrane, mitochondrial proton-transporting ATP synthase complex, catalytic core F(1); EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, F1 complex, OSCP/delta subunit (InterPro:IPR000711); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    4310254..4312066 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_121348.4 → NP_196849.1  delta subunit of Mt ATP synthase [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_196849.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q93W68, Q96251, Q9LYR1
    UniProtKB/TrEMBL
    A0A178UJF9, A0A5S9Y3S6
    Conserved Domains (1) summary
    pfam00213
    Location:64 → 229
    OSCP; ATP synthase delta (OSCP) subunit

  2. NM_001036798.1 → NP_001031875.1  delta subunit of Mt ATP synthase [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001031875.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    B9DGP8
    Conserved Domains (1) summary
    pfam00213
    Location:48 → 181
    OSCP; ATP synthase delta (OSCP) subunit
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q96251.2

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools