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Emb:.1 protein, putative (Protein of unknown function, DUF642) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 831265, updated on 18-Sep-2024

Summary

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Official Full Name
Emb:.1 protein, putative (Protein of unknown function, DUF642)
Primary source
TAIR:AT5G14150
Locus tag
AT5G14150
See related
Araport:AT5G14150
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MUA22.15; MUA22_15
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Genomic context

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Location:
chromosome: 5
Exon count:
4
Sequence:
Chromosome: 5; NC_003076.8 (4565135..4566988, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Major facilitator superfamily protein Neighboring gene Peroxidase superfamily protein Neighboring gene nucleic acid binding / zinc ion binding protein Neighboring gene F-box family protein Neighboring gene SWIB/MDM2 domain superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A proteomic and genomic analysis. Borner GH, et al. Plant Physiol, 2003 Jun. PMID 12805588, Free PMC Article
  2. Prediction of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A genomic analysis. Borner GH, et al. Plant Physiol, 2002 Jun. PMID 12068095, Free PMC Article
  3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_001343317.1
NM_121419.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in membrane TAS
Traceable Author Statement
more info
 PubMed 

General protein information

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Preferred Names
Emb:.1 protein, putative (Protein of unknown function, DUF642)
NP_196919.1
  • Protein of unknown function, DUF642; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF642 (InterPro:IPR006946); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF642 (TAIR:AT5G11420.1); Has 313 Blast hits to 252 proteins in 21 species: Archae - 0; Bacteria - 7; Metazoa - 0; Fungi - 0; Plants - 305; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    4565135..4566988 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_121419.3 → NP_196919.1  Emb:.1 protein, putative (Protein of unknown function, DUF642) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_196919.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178U9V4, A0A5S9Y3Z1, A0A654G0V0, Q9FMT6
    Conserved Domains (1) summary
    PLN03089
    Location:1 → 368
    PLN03089; hypothetical protein; Provisional

  2. NM_001343317.1 → NP_001332535.1  Emb:.1 protein, putative (Protein of unknown function, DUF642) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178U9V4, A0A5S9Y3Z1, A0A654G0V0, Q9FMT6
    Conserved Domains (1) summary
    PLN03089
    Location:1 → 368
    PLN03089; hypothetical protein; Provisional
Nucleotide Protein
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