U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SK13 shaggy-like kinase 13 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 831316, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
SK13
Official Full Name
shaggy-like kinase 13
Primary source
TAIR:AT5G14640
Locus tag
AT5G14640
See related
Araport:AT5G14640
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATSK13; shaggy-like kinase 13; SHAGGY-LIKE KINASE 13; T15N1.130; T15N1_130
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See SK13 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
14
Sequence:
Chromosome: 5; NC_003076.8 (4718994..4722371, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene DEAD box RNA helicase family protein Neighboring gene domains rearranged methyltransferase 2 Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Expression profiling of the whole Arabidopsis shaggy-like kinase multigene family by real-time reverse transcriptase-polymerase chain reaction. Charrier B, et al. Plant Physiol, 2002 Oct. PMID 12376626, Free PMC Article
  2. Plant GSK3 proteins regulate xylem cell differentiation downstream of TDIF-TDR signalling. Kondo Y, et al. Nat Commun, 2014 Mar 24. PMID 24662460
  3. The F-box Protein KIB1 Mediates Brassinosteroid-Induced Inactivation and Degradation of GSK3-like Kinases in Arabidopsis. Zhu JY, et al. Mol Cell, 2017 Jun 1. PMID 28575660, Free PMC Article
  4. Autophosphorylation profiling of Arabidopsis protein kinases using the cell-free system. Nemoto K, et al. Phytochemistry, 2011 Jul. PMID 21477822
  5. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help
NM_001343350.1
NM_121468.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein serine/threonine kinase activity HDA PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within hyperosmotic response IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within protein autophosphorylation HDA PubMed 
acts_upstream_of_or_within response to salt stress IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
shaggy-like kinase 13
NP_196968.2
  • shaggy-like kinase 13 (SK13); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: response to salt stress, hyperosmotic response; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: shaggy-related kinase 11 (TAIR:AT5G26751.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    4718994..4722371 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_121468.4 → NP_196968.2  shaggy-like kinase 13 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_196968.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8VZD5, Q9LYJ6
    UniProtKB/TrEMBL
    A0A178UDT1
    Conserved Domains (2) summary
    smart00220
    Location:74 → 358
    S_TKc; Serine/Threonine protein kinases, catalytic domain
    cd14137
    Location:69 → 361
    STKc_GSK3; The catalytic domain of the Serine/Threonine Kinase, Glycogen Synthase Kinase 3

  2. NM_001343350.1 → NP_001329975.1  shaggy-like kinase 13 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8VZD5, Q9LYJ6
    UniProtKB/TrEMBL
    A0A178UDT1
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8VZD5.1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools