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Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 831357, updated on 18-Sep-2024

Summary

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Official Full Name
Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
Primary source
TAIR:AT5G15050
Locus tag
AT5G15050
See related
Araport:AT5G15050
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F2G14.170; F2G14_170; GlcA transferase 14B; GlcAT14B
Summary
Encodes GlcAT14B. Has glucuronosyltransferase activity adding glucuronic acid residues to beta-1,3- and beta-1,6-linked galactans.
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Genomic context

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Location:
chromosome: 5
Exon count:
4
Sequence:
Chromosome: 5; NC_003076.8 (4871531..4873683, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene paired amphipathic helix Sin3-like protein Neighboring gene Paired amphipathic helix (PAH2) superfamily protein Neighboring gene Lateral organ boundaries (LOB) domain family protein Neighboring gene Phosphoglycerate mutase-like family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Arabidopsis thaliana glucuronosyltransferase in family GT14. Dilokpimol A, et al. Plant Signal Behav, 2014. PMID 24739253, Free PMC Article
  2. Elucidating the roles of three β-glucuronosyltransferases (GLCATs) acting on arabinogalactan-proteins using a CRISPR-Cas9 multiplexing approach in Arabidopsis. Zhang Y, et al. BMC Plant Biol, 2020 May 18. PMID 32423474, Free PMC Article
  3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Elucidating the roles of three beta-glucuronosyltransferases (GLCATs) acting on arabinogalactan-proteins using a CRISPR-Cas9 multiplexing approach in Arabidopsis.
    Title: Elucidating the roles of three β-glucuronosyltransferases (GLCATs) acting on arabinogalactan-proteins using a CRISPR-Cas9 multiplexing approach in Arabidopsis.
  2. At5g15050 and At2g37585 both possess glucuronosyltransferase activity
    Title: Arabidopsis thaliana glucuronosyltransferase in family GT14.
Submit: New GeneRIF Correction

General gene information

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NM_121509.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables glucuronosyltransferase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables glycosyltransferase activity ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
located_in Golgi apparatus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
NP_197009.1
  • Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups, acetylglucosaminyltransferase activity; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 14 (InterPro:IPR003406), Core-2/I-Branching enzyme (InterPro:IPR021141); BEST Arabidopsis thaliana protein match is: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (TAIR:AT5G39990.1); Has 926 Blast hits to 925 proteins in 118 species: Archae - 0; Bacteria - 49; Metazoa - 525; Fungi - 0; Plants - 316; Viruses - 14; Other Eukaryotes - 22 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    4871531..4873683 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_121509.3 → NP_197009.1  Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_197009.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LFQ0
    UniProtKB/TrEMBL
    A0A178U983, A0A5S9Y4U0
    Conserved Domains (1) summary
    cl27418
    Location:18 → 434
    Branch; Core-2/I-Branching enzyme
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LFQ0.1

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