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RING/FYVE/PHD zinc finger superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 831529, updated on 18-Sep-2024

Summary

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Official Full Name
RING/FYVE/PHD zinc finger superfamily protein
Primary source
TAIR:AT5G16680
Locus tag
AT5G16680
See related
Araport:AT5G16680
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MTG13.4; MTG13_4
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Genomic context

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Location:
chromosome: 5
Exon count:
12
Sequence:
Chromosome: 5; NC_003076.8 (5467228..5473592, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene Chaperone DnaJ-domain superfamily protein Neighboring gene Low-density receptor-like protein Neighboring gene origin recognition complex subunit 3 Neighboring gene Glycosyl hydrolase superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The MOM1 complex recruits the RdDM machinery via MORC6 to establish de novo DNA methylation. Li Z, et al. bioRxiv, 2023 Jan 10. PMID 36711532, Free PMC Article
  2. Coupling of H3K27me3 recognition with transcriptional repression through the BAH-PHD-CPL2 complex in Arabidopsis. Zhang YZ, et al. Nat Commun, 2020 Dec 4. PMID 33277495, Free PMC Article
  3. A histone H3K27me3 reader cooperates with a family of PHD finger-containing proteins to regulate flowering time in Arabidopsis. Qian F, et al. J Integr Plant Biol, 2021 Apr. PMID 33433058
  4. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_001343460.1
NM_121673.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables histone binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables histone reader activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within negative regulation of gene expression, epigenetic IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within negative regulation of transcription elongation by RNA polymerase II IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within_negative_effect regulation of photoperiodism, flowering IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
RING/FYVE/PHD zinc finger superfamily protein
NP_197170.3
  • RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT3G02890.1); Has 6870 Blast hits to 4822 proteins in 413 species: Archae - 8; Bacteria - 605; Metazoa - 3213; Fungi - 704; Plants - 729; Viruses - 19; Other Eukaryotes - 1592 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    5467228..5473592 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_121673.5 → NP_197170.3  RING/FYVE/PHD zinc finger superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_197170.3

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A0A178UF49, F4KE59, Q0WNM4, Q9LFE9
    UniProtKB/TrEMBL
    A0A384KWQ2, A0A654G226
    Conserved Domains (1) summary
    cl22851
    Location:286 → 326
    PHD_SF; PHD finger superfamily

  2. NM_001343460.1 → NP_001332208.1  RING/FYVE/PHD zinc finger superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A0A178UF49, F4KE59, Q0WNM4, Q9LFE9
    UniProtKB/TrEMBL
    A0A384KWQ2, A0A654G226
    Conserved Domains (1) summary
    cl22851
    Location:286 → 326
    PHD_SF; PHD finger superfamily
Nucleotide Protein
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