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caldesmon-like protein (Protein of unknown function, DUF593) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 831534, updated on 18-Sep-2024

Summary

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Official Full Name
caldesmon-like protein (Protein of unknown function, DUF593)
Primary source
TAIR:AT5G16720
Locus tag
AT5G16720
See related
Araport:AT5G16720
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F5E19.60; F5E19_60; MyoB3; myosin binding protein 3
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Genomic context

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Location:
chromosome: 5
Exon count:
3
Sequence:
Chromosome: 5; NC_003076.8 (5494228..5496846)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene dehydroascorbate reductase 1 Neighboring gene protein EMBRYO DEFECTIVE 2247 Neighboring gene weak chloroplast movement under blue light protein (DUF827) Neighboring gene Transmembrane amino acid transporter family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Lipid droplets in Arabidopsis thaliana leaves contain myosin-binding proteins and enzymes associated with furan-containing fatty acid biosynthesis. Omata Y, et al. Front Plant Sci, 2024. PMID 38495375, Free PMC Article
  2. Identification of myosin XI receptors in Arabidopsis defines a distinct class of transport vesicles. Peremyslov VV, et al. Plant Cell, 2013 Aug. PMID 23995081, Free PMC Article
  3. Myosin-driven transport network in plants. Kurth EG, et al. Proc Natl Acad Sci U S A, 2017 Feb 21. PMID 28096376, Free PMC Article
  4. Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. Kim TW, et al. Plant Cell, 2023 Mar 15. PMID 36660928, Free PMC Article
  5. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_121678.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables myosin XI tail binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables myosin binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in lipid droplet IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
caldesmon-like protein (Protein of unknown function, DUF593)
NP_197174.2
  • Protein of unknown function, DUF593; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF593 (InterPro:IPR007656); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF593 (TAIR:AT1G70750.1); Has 18197 Blast hits to 13174 proteins in 981 species: Archae - 171; Bacteria - 1369; Metazoa - 9112; Fungi - 1364; Plants - 1043; Viruses - 91; Other Eukaryotes - 5047 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    5494228..5496846
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_121678.3 → NP_197174.2  caldesmon-like protein (Protein of unknown function, DUF593) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_197174.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q0WNW4, Q9LFE5
    UniProtKB/TrEMBL
    A0A178UCL7, A0A654G1M3
    Conserved Domains (2) summary
    pfam17380
    Location:358 → 640
    DUF5401; Family of unknown function (DUF5401)
    pfam04576
    Location:358 → 449
    Zein-binding
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q0WNW4.1

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