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weak chloroplast movement under blue light protein (DUF827) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 831536, updated on 18-Sep-2024

Summary

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Official Full Name
weak chloroplast movement under blue light protein (DUF827)
Primary source
TAIR:AT5G16730
Locus tag
AT5G16730
See related
Araport:AT5G16730
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F5E19.70; F5E19_70
Summary
Encodes a microtubule-associated protein.
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Genomic context

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Location:
chromosome: 5
Exon count:
3
Sequence:
Chromosome: 5; NC_003076.8 (5497524..5500985)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene protein EMBRYO DEFECTIVE 2247 Neighboring gene caldesmon-like protein (Protein of unknown function, DUF593) Neighboring gene Transmembrane amino acid transporter family protein Neighboring gene Transducin family protein / WD-40 repeat family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. AtMAC stabilizes the phragmoplast by crosslinking microtubules and actin filaments during cytokinesis. Du P, et al. J Integr Plant Biol, 2023 Aug. PMID 37093857
  2. A novel upstream regulator of WRKY53 transcription during leaf senescence in Arabidopsis thaliana. Miao Y, et al. Plant Biol (Stuttg), 2008 Sep. PMID 18721316
  3. Purification and characterization of novel microtubule-associated proteins from Arabidopsis cell suspension cultures. Hamada T, et al. Plant Physiol, 2013 Dec. PMID 24134884, Free PMC Article
  4. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
  5. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The AT5G16730 protein binds to the WRKY53 promoter and influences the expression of WRKY53.
    Title: A novel upstream regulator of WRKY53 transcription during leaf senescence in Arabidopsis thaliana.
Submit: New GeneRIF Correction

General gene information

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NM_121679.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in phragmoplast microtubule organization IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
part_of microtubule associated complex IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  
is_active_in phragmoplast IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plastid HDA PubMed 

General protein information

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Preferred Names
weak chloroplast movement under blue light protein (DUF827)
NP_197175.1
  • LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF827, plant (InterPro:IPR008545), Spectrin/alpha-actinin (InterPro:IPR018159); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF827) (TAIR:AT3G02930.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    5497524..5500985
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_121679.4 → NP_197175.1  weak chloroplast movement under blue light protein (DUF827) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_197175.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q56Y73, Q9LFE4
    UniProtKB/TrEMBL
    A0A178UKQ2, A0A5S9Y4R5
    Conserved Domains (1) summary
    COG1196
    Location:114 → 447
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LFE4.1

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