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MYB9 myb domain protein 9 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 831540, updated on 18-Sep-2024

Summary

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Official Symbol
MYB9
Official Full Name
myb domain protein 9
Primary source
TAIR:AT5G16770
Locus tag
AT5G16770
See related
Araport:AT5G16770
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AtMYB9; F5E19.110; F5E19_110; myb domain protein 9
Summary
Member of the R2R3 factor gene family.
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Genomic context

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See MYB9 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
3
Sequence:
Chromosome: 5; NC_003076.8 (5514717..5517153)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Transducin family protein / WD-40 repeat family protein Neighboring gene Inositol 1,3,4-trisphosphate 5/6-kinase family protein Neighboring gene SART-1 family Neighboring gene Tho complex subunit 7/Mft1p Neighboring gene Acyl-CoA N-acyltransferases (NAT) superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. AtMYB92 enhances fatty acid synthesis and suberin deposition in leaves of Nicotiana benthamiana. To A, et al. Plant J, 2020 Jul. PMID 32246506
  2. A PXY-Mediated Transcriptional Network Integrates Signaling Mechanisms to Control Vascular Development in Arabidopsis. Smit ME, et al. Plant Cell, 2020 Feb. PMID 31806676, Free PMC Article
  3. Transcriptional regulation of nitrogen-associated metabolism and growth. Gaudinier A, et al. Nature, 2018 Nov. PMID 30356219
  4. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
  5. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_001343462.1
NM_001343463.1
NM_121683.4
NM_203063.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables transcription cis-regulatory region binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
myb domain protein 9
NP_197179.2
  • myb domain protein 9 (MYB9); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 107 (TAIR:AT3G02940.1); Has 9105 Blast hits to 8386 proteins in 517 species: Archae - 0; Bacteria - 0; Metazoa - 783; Fungi - 490; Plants - 5992; Viruses - 3; Other Eukaryotes - 1837 (source: NCBI BLink).
NP_974792.1
  • myb domain protein 9 (MYB9); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Myb transcription factor (InterPro:IPR015495), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: myb domain protein 107 (TAIR:AT3G02940.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    5514717..5517153
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_203063.2 → NP_974792.1  myb domain protein 9 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974792.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654G237, A0A7G2FB26, F4KE69
    Conserved Domains (1) summary
    PLN03091
    Location:1 → 200
    PLN03091; hypothetical protein; Provisional

  2. NM_001343462.1 → NP_001330269.1  myb domain protein 9 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q6R054, Q9LFE1
    Conserved Domains (1) summary
    PLN03091
    Location:1 → 200
    PLN03091; hypothetical protein; Provisional

  3. NM_121683.4 → NP_197179.2  myb domain protein 9 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_197179.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654G237, A0A7G2FB26, F4KE69
    Conserved Domains (1) summary
    PLN03091
    Location:1 → 200
    PLN03091; hypothetical protein; Provisional

  4. NM_001343463.1 → NP_001330270.1  myb domain protein 9 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q6R054, Q9LFE1
    Conserved Domains (1) summary
    PLN03091
    Location:1 → 200
    PLN03091; hypothetical protein; Provisional
Nucleotide Protein
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