U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

BPA1 binding partner of acd11 1 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 831547, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
BPA1
Official Full Name
binding partner of acd11 1
Primary source
TAIR:AT5G16840
Locus tag
AT5G16840
See related
Araport:AT5G16840
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
binding partner of acd11 1; F5E19.180; F5E19_180
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See BPA1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
5
Sequence:
Chromosome: 5; NC_003076.8 (5535845..5538250)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene heat shock factor 3 Neighboring gene syntaxin of plants 21 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene telomerase reverse transcriptase Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene Peptidyl-tRNA hydrolase II (PTH2) family protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Identification of proteins interacting with Arabidopsis ACD11. Petersen NH, et al. J Plant Physiol, 2009 Apr 1. PMID 18845362
  2. A Phytophthora capsici Effector Targets ACD11 Binding Partners that Regulate ROS-Mediated Defense Response in Arabidopsis. Li Q, et al. Mol Plant, 2019 Apr 1. PMID 30703564
  3. Protein and metabolite composition of Arabidopsis stress granules. Kosmacz M, et al. New Phytol, 2019 May. PMID 30664249
  4. Arabidopsis G-protein interactome reveals connections to cell wall carbohydrates and morphogenesis. Klopffleisch K, et al. Mol Syst Biol, 2011 Sep 27. PMID 21952135, Free PMC Article
  5. Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. Kim TW, et al. Plant Cell, 2023 Mar 15. PMID 36660928, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Homology

NM_001085126.1
NM_001085127.1
NM_121690.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables nucleic acid binding ISS
Inferred from Sequence or Structural Similarity
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within defense response to fungus IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within negative regulation of plant-type hypersensitive response IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasmic stress granule IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plastid HDA PubMed 

General protein information

Go to the top of the page Help
Preferred Names
binding partner of acd11 1
NP_001078595.1
  • binding partner of acd11 1 (BPA1); FUNCTIONS IN: oxidoreductase activity, nucleotide binding, nucleic acid binding; INVOLVED IN: oxidation reduction; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT4G17720.1); Has 439 Blast hits to 439 proteins in 94 species: Archae - 0; Bacteria - 4; Metazoa - 20; Fungi - 117; Plants - 286; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
NP_001078596.1
  • binding partner of acd11 1 (BPA1); FUNCTIONS IN: oxidoreductase activity, nucleotide binding, nucleic acid binding; INVOLVED IN: oxidation reduction; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT4G17720.1); Has 470 Blast hits to 470 proteins in 102 species: Archae - 0; Bacteria - 0; Metazoa - 26; Fungi - 113; Plants - 311; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).
NP_197186.1
  • binding partner of acd11 1 (BPA1); FUNCTIONS IN: oxidoreductase activity, nucleotide binding, nucleic acid binding; INVOLVED IN: oxidation reduction; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT4G17720.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    5535845..5538250
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_121690.4 → NP_197186.1  binding partner of acd11 1 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_197186.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A8MQX8, A8MSB5, C0Z220, Q93Z43, Q9LFD5
    UniProtKB/TrEMBL
    A0A178URR7, A0A5S9Y528, Q8LB67
    Conserved Domains (1) summary
    PLN03120
    Location:2 → 258
    PLN03120; nucleic acid binding protein; Provisional

  2. NM_001085126.1 → NP_001078595.1  binding partner of acd11 1 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001078595.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q8LB67
    Conserved Domains (2) summary
    PLN03120
    Location:2 → 259
    PLN03120; nucleic acid binding protein; Provisional
    cl17169
    Location:7 → 225
    RRM_SF; RNA recognition motif (RRM) superfamily

  3. NM_001085127.1 → NP_001078596.1  binding partner of acd11 1 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001078596.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q8LB67
    Conserved Domains (2) summary
    PLN03120
    Location:1 → 256
    PLN03120; nucleic acid binding protein; Provisional
    cl17169
    Location:5 → 222
    RRM_SF; RNA recognition motif (RRM) superfamily
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LFD5.1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.