Tautomerase/MIF superfamily protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Full Name: Tautomerase/MIF superfamily protein
Primary source: TAIR:AT5G01650
Locus tag: AT5G01650
See related: Araport:AT5G01650
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: F7A7.170; F7A7_170
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Genomic context

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See in Genome Data Viewer

Location:: chromosome: 5

Exon count:: 4

Sequence:: Chromosome: 5; NC_003076.8 (242450..244111, complement)

Chromosome 5 - NC_003076.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Cross-kingdom mimicry of the receptor signaling and leukocyte recruitment activity of a human cytokine by its plant orthologs.
Title: Cross-kingdom mimicry of the receptor signaling and leukocyte recruitment activity of a human cytokine by its plant orthologs.

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General gene information

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Homology

Orthologs from OrthoDB

NM_001342601.1

Supported by ESTs:

NM_001342602.1

Supported by ESTs:

NM_001342603.1

Supported by ESTs:

NM_120243.4

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables protein binding	IPI Inferred from Physical Interaction more info	PubMed

Component	Evidence Code	Pubs
located_in chloroplast	HDA more info	PubMed
located_in chloroplast	ISM Inferred from Sequence Model more info
located_in cytoplasm	IDA Inferred from Direct Assay more info	PubMed
located_in cytosol	HDA more info	PubMed
located_in nucleus	IDA Inferred from Direct Assay more info	PubMed

General protein information

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Preferred Names: Tautomerase/MIF superfamily protein

NP_001318454.1

Tautomerase/MIF superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: inflammatory response, response to other organism; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tautomerase (InterPro:IPR014347), Macrophage migration inhibitory factor (InterPro:IPR001398); BEST Arabidopsis thaliana protein match is: Tautomerase/MIF superfamily protein (TAIR:AT5G57170.2); Has 820 Blast hits to 820 proteins in 207 species: Archae - 0; Bacteria - 141; Metazoa - 384; Fungi - 26; Plants - 141; Viruses - 0; Other Eukaryotes - 128 (source: NCBI BLink).

NP_195785.1

Tautomerase/MIF superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: inflammatory response, response to other organism; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tautomerase (InterPro:IPR014347), Macrophage migration inhibitory factor (InterPro:IPR001398); BEST Arabidopsis thaliana protein match is: Tautomerase/MIF superfamily protein (TAIR:AT5G57170.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003076.8 Reference assembly

Range

242450..244111 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_120243.4 → NP_195785.1 Tautomerase/MIF superfamily protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_195785.1

Status: REVIEWED

UniProtKB/TrEMBL

A0A178ULQ7, Q9M011, Q9SMV2

Conserved Domains (1) summary

cl00235
Location:1 → 114

4Oxalocrotonate_Tautomerase; 4-Oxalocrotonate Tautomerase: Catalyzes the isomerization of unsaturated ketones. The structure is a homohexamer that is arranged as a trimer of dimers. The hexamer contains six active sites, each formed by residues from three monomers, two from one ...
NM_001342601.1 → NP_001318454.1 Tautomerase/MIF superfamily protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

F4K9G5, Q9SMV2
NM_001342602.1 → NP_001329952.1 Tautomerase/MIF superfamily protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

F4K9G5, Q9SMV2
NM_001342603.1 → NP_001329951.1 Tautomerase/MIF superfamily protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1P8B982, A0A654FXG7, Q9SMV2

Conserved Domains (1) summary

cl00235
Location:1 → 107

4Oxalocrotonate_Tautomerase; 4-Oxalocrotonate Tautomerase: Catalyzes the isomerization of unsaturated ketones. The structure is a homohexamer that is arranged as a trimer of dimers. The hexamer contains six active sites, each formed by residues from three monomers, two from one ...