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expressed in response to phosphate starvation protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 831795, updated on 18-Sep-2024

Summary

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Official Full Name
expressed in response to phosphate starvation protein
Primary source
TAIR:AT5G03545
Locus tag
AT5G03545
See related
Araport:AT5G03545
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AT4; ATIPS2; INDUCED BY PI STARVATION 2
Summary
Expressed in response to phosphate starvation, this response is enhanced by the presence of IAA.
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Genomic context

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Location:
chromosome: 5
Exon count:
1
Sequence:
Chromosome: 5; NC_003076.8 (894582..895517)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene RAB GTPase homolog 8C Neighboring gene RAB GTPase homolog C2A Neighboring gene exocyst subunit exo70 family protein A1 Neighboring gene MATH domain/coiled-coil protein Neighboring gene uncharacterized protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Loss of At4 function impacts phosphate distribution between the roots and the shoots during phosphate starvation. Shin H, et al. Plant J, 2006 Mar. PMID 16460506
  2. Histone acetyltransferase GCN5-mediated regulation of long non-coding RNA At4 contributes to phosphate starvation response in Arabidopsis. Wang T, et al. J Exp Bot, 2019 Nov 18. PMID 31401648, Free PMC Article
  3. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
  4. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Histone acetyltransferase GCN5-mediated regulation of long non-coding RNA At4 contributes to phosphate starvation response in Arabidopsis.
    Title: Histone acetyltransferase GCN5-mediated regulation of long non-coding RNA At4 contributes to phosphate starvation response in Arabidopsis.
  2. At4 is involved in the internal allocation of phosphate (Pi) between shoot and roots . [At4]
    Title: Loss of At4 function impacts phosphate distribution between the roots and the shoots during phosphate starvation.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_180427.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within cellular response to phosphate starvation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within phosphate ion transport IGI
Inferred from Genetic Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
expressed in response to phosphate starvation protein
NP_850758.1
  • unknown protein; Has 7 Blast hits to 7 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    894582..895517
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_180427.2 → NP_850758.1  expressed in response to phosphate starvation protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_850758.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UNP8, C0Z298, Q9LZD2
Nucleotide Protein
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