U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

zinc finger protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 831839, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Full Name
zinc finger protein
Primary source
TAIR:AT5G03440
Locus tag
AT5G03440
See related
Araport:AT5G03440
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F12E4.200; F12E4_200
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 5
Exon count:
5
Sequence:
Chromosome: 5; NC_003076.8 (856815..858444, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene phosphoadenosine phosphosulfate (PAPS) reductase family protein Neighboring gene ncRNA Neighboring gene Ca2+dependent plant phosphoribosyltransferase family protein Neighboring gene tRNA-Tyr Neighboring gene Transducin/WD40 repeat-like superfamily protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

NM_001342705.1
NM_120423.2
NM_202997.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
zinc finger protein
NP_568118.1
  • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G54880.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_974726.1
  • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G54880.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    856815..858444 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_120423.2 → NP_568118.1  zinc finger protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_568118.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UKJ3, A0A384KNI3, Q8LBJ0
    Conserved Domains (1) summary
    pfam13259
    Location:7 → 98
    DUF4050; Protein of unknown function (DUF4050)

  2. NM_202997.2 → NP_974726.1  zinc finger protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974726.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UKJ3, A0A384KNI3, Q8LBJ0
    Conserved Domains (1) summary
    pfam13259
    Location:7 → 98
    DUF4050; Protein of unknown function (DUF4050)

  3. NM_001342705.1 → NP_001330449.1  zinc finger protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UKJ3, A0A384KNI3, Q8LBJ0
    Conserved Domains (1) summary
    pfam13259
    Location:7 → 98
    DUF4050; Protein of unknown function (DUF4050)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools