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Leucine-rich repeat (LRR) family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 832088, updated on 18-Sep-2024

Summary

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Official Full Name
Leucine-rich repeat (LRR) family protein
Primary source
TAIR:AT5G19680
Locus tag
AT5G19680
See related
Araport:AT5G19680
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T29J13.100; T29J13_100
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Genomic context

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Location:
chromosome: 5
Exon count:
6
Sequence:
Chromosome: 5; NC_003076.8 (6649574..6652046)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene SITE-1 protease Neighboring gene Exostosin family protein Neighboring gene uncharacterized protein Neighboring gene staurosporin and temperature sensitive 3-like A Neighboring gene MATE efflux family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Role of Protein Phosphatase1 Regulatory Subunit3 in Mediating the Abscisic Acid Response. Zhang J, et al. Plant Physiol, 2020 Nov. PMID 32948668, Free PMC Article
  2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_121973.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within abscisic acid-activated signaling pathway IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within protein localization to nucleus IGI
Inferred from Genetic Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Leucine-rich repeat (LRR) family protein
NP_197469.1
  • Leucine-rich repeat (LRR) family protein; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT5G22320.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    6649574..6652046
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_121973.5 → NP_197469.1  Leucine-rich repeat (LRR) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_197469.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q84WJ9, Q8LG14
    UniProtKB/TrEMBL
    A0A178UK18, A0A5S9Y618
    Conserved Domains (3) summary
    sd00033
    Location:89 → 110
    LRR_RI; leucine-rich repeat [structural motif]
    NF033189
    Location:20 → 183
    internalin_A; class 1 internalin InlA
    cd21340
    Location:121 → 308
    PPP1R42; protein phosphatase 1 regulatory subunit 42
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q84WJ9.1

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