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integral membrane protein (Protein of unknown function DUF92, transmembrane) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 832115, updated on 18-Sep-2024

Summary

Official Full Name
integral membrane protein (Protein of unknown function DUF92, transmembrane)
Primary source
TAIR:AT5G19930
Locus tag
AT5G19930
See related
Araport:AT5G19930
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F28I16.80; F28I16_80
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Genomic context

Location:
chromosome: 5
Exon count:
5
Sequence:
Chromosome: 5; NC_003076.8 (6737512..6739573, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene SOH1 family protein Neighboring gene Transducin/WD40 repeat-like superfamily protein Neighboring gene Plastid-lipid associated protein PAP / fibrillin family protein Neighboring gene tudor domain protein (DUF1767) Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General protein information

Preferred Names
integral membrane protein (Protein of unknown function DUF92, transmembrane)
NP_001190343.1
  • Protein of unknown function DUF92, transmembrane; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF92, transmembrane (InterPro:IPR002794).
NP_568386.1
  • Protein of unknown function DUF92, transmembrane; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF92, transmembrane (InterPro:IPR002794); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    6737512..6739573 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_122000.4NP_568386.1  integral membrane protein (Protein of unknown function DUF92, transmembrane) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_568386.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q0WP96, Q8LF53
    UniProtKB/TrEMBL
    A0A178UD88, A0A5S9Y603, A0A654G3A1, A0A7G2FDU9
    Conserved Domains (1) summary
    pfam01940
    Location:14277
    DUF92; Integral membrane protein DUF92
  2. NM_001203414.2NP_001190343.1  integral membrane protein (Protein of unknown function DUF92, transmembrane) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001190343.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q0WP96, Q8LF53
    UniProtKB/TrEMBL
    A0A178UD88, A0A5S9Y603, A0A654G3A1, A0A7G2FDU9
    Conserved Domains (1) summary
    pfam01940
    Location:14277
    DUF92; Integral membrane protein DUF92