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Plastid-lipid associated protein PAP / fibrillin family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 832116, updated on 18-Sep-2024

Summary

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Official Full Name
Plastid-lipid associated protein PAP / fibrillin family protein
Primary source
TAIR:AT5G19940
Locus tag
AT5G19940
See related
Araport:AT5G19940
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F28I16.90; F28I16_90
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Genomic context

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Location:
chromosome: 5
Exon count:
4
Sequence:
Chromosome: 5; NC_003076.8 (6739624..6740957)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Transducin/WD40 repeat-like superfamily protein Neighboring gene integral membrane protein (Protein of unknown function DUF92, transmembrane) Neighboring gene tudor domain protein (DUF1767) Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein Neighboring gene GRAS family transcription factor family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Lack of FIBRILLIN6 in Arabidopsis thaliana affects light acclimation and sulfate metabolism. Lee K, et al. New Phytol, 2020 Feb. PMID 31596965
  2. Arabidopsis FIBRILLIN6 influences carotenoid biosynthesis by directly promoting phytoene synthase activity. Iglesias-Sanchez A, et al. Plant Physiol, 2024 Feb 29. PMID 37966976, Free PMC Article
  3. Proteomics of the chloroplast envelope membranes from Arabidopsis thaliana. Ferro M, et al. Mol Cell Proteomics, 2003 May. PMID 12766230
  4. Proteomic study of the Arabidopsis thaliana chloroplastic envelope membrane utilizing alternatives to traditional two-dimensional electrophoresis. Froehlich JE, et al. J Proteome Res, 2003 Jul-Aug. PMID 12938931
  5. AT_CHLORO, a comprehensive chloroplast proteome database with subplastidial localization and curated information on envelope proteins. Ferro M, et al. Mol Cell Proteomics, 2010 Jun. PMID 20061580, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

NM_001161250.1
NM_122001.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast HDA PubMed 
located_in chloroplast IDA
Inferred from Direct Assay
more info
 PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in chloroplast envelope HDA PubMed 
located_in chloroplast thylakoid HDA PubMed 
located_in plastid HDA PubMed 
located_in plastoglobule IDA
Inferred from Direct Assay
more info
 PubMed 
located_in thylakoid IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
Plastid-lipid associated protein PAP / fibrillin family protein
NP_001154722.1
  • Plastid-lipid associated protein PAP / fibrillin family protein; FUNCTIONS IN: structural molecule activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Plastid lipid-associated protein/fibrillin (InterPro:IPR006843); Has 21 Blast hits to 21 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
NP_197494.1
  • Plastid-lipid associated protein PAP / fibrillin family protein; FUNCTIONS IN: structural molecule activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Plastid lipid-associated protein/fibrillin (InterPro:IPR006843); BEST Arabidopsis thaliana protein match is: Plastid-lipid associated protein PAP / fibrillin family protein (TAIR:AT3G26070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    6739624..6740957
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_122001.3 → NP_197494.1  Plastid-lipid associated protein PAP / fibrillin family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_197494.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q941D3
    UniProtKB/TrEMBL
    A0A178UEH3, A0A5S9Y5Q3, A0A654G2P2
    Conserved Domains (1) summary
    pfam04755
    Location:67 → 235
    PAP_fibrillin

  2. NM_001161250.1 → NP_001154722.1  Plastid-lipid associated protein PAP / fibrillin family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001154722.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UEH3, A0A5S9Y5Q3, F4K2P2
    Conserved Domains (1) summary
    pfam04755
    Location:67 → 223
    PAP_fibrillin; PAP_fibrillin
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q941D3.1

Gene LinkOut

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