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GER3 germin 3 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 832185, updated on 18-Sep-2024

Summary

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Official Symbol
GER3
Official Full Name
germin 3
Primary source
TAIR:AT5G20630
Locus tag
AT5G20630
See related
Araport:AT5G20630
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ARABIDOPSIS THALIANA GERMIN 3; ATGER3; germin 3; GERMIN-LIKE PROTEIN 3; GLP3; GLP3A; GLP3B; T1M15.30; T1M15_30
Summary
Encodes a germin-like protein. Its transcripts are more abundant in RNA from leaves collected in the evening, suggesting some kind of circadian regulation.
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Genomic context

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See GER3 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
1
Sequence:
Chromosome: 5; NC_003076.8 (6975029..6976036, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene EEIG1/EHBP1 protein amino-terminal domain protein Neighboring gene ubiquitin 4 Neighboring gene guanine nucleotide-binding protein subunit gamma Neighboring gene LURP-one-like protein (DUF567) Neighboring gene copper transporter 5

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Arabidopsis thaliana germin-like proteins: common and specific features point to a variety of functions. Membré N, et al. Planta, 2000 Aug. PMID 10987552
  2. Identification of Evening Complex Associated Proteins in Arabidopsis by Affinity Purification and Mass Spectrometry. Huang H, et al. Mol Cell Proteomics, 2016 Jan. PMID 26545401, Free PMC Article
  3. Arabidopsis scaffold protein RACK1A interacts with diverse environmental stress and photosynthesis related proteins. Kundu N, et al. Plant Signal Behav, 2013 May. PMID 23435172, Free PMC Article
  4. Cell wall proteins in apoplastic fluids of Arabidopsis thaliana rosettes: identification by mass spectrometry and bioinformatics. Boudart G, et al. Proteomics, 2005 Jan. PMID 15593128
  5. Analysis of the Arabidopsis nuclear proteome and its response to cold stress. Bae MS, et al. Plant J, 2003 Dec. PMID 14617066

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_122070.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables manganese ion binding IEA
Inferred from Electronic Annotation
more info
  
NOT enables oxalate oxidase activity IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in apoplast HDA PubMed 
located_in extracellular matrix IDA
Inferred from Direct Assay
more info
 PubMed 
located_in extracellular region ISM
Inferred from Sequence Model
more info
  
located_in nucleus HDA PubMed 
located_in plant-type cell wall HDA PubMed 
located_in plastid HDA PubMed 
located_in secretory vesicle HDA PubMed 

General protein information

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Preferred Names
germin 3
NP_197563.1
  • germin 3 (GER3); INVOLVED IN: response to cold, peptidyl-cysteine S-nitrosylation; LOCATED IN: extracellular matrix, apoplast, cell wall, nucleus, plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), Germin (InterPro:IPR001929), Germin, manganese binding site (InterPro:IPR019780); BEST Arabidopsis thaliana protein match is: germin-like protein 1 (TAIR:AT1G72610.1); Has 1486 Blast hits to 1484 proteins in 101 species: Archae - 0; Bacteria - 34; Metazoa - 0; Fungi - 23; Plants - 1414; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    6975029..6976036 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_122070.3 → NP_197563.1  germin 3 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_197563.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P94028, P94072
    UniProtKB/TrEMBL
    A0A178UHR1, A0A5S9Y5Y3, A0A654G2T8
    Conserved Domains (1) summary
    cd02241
    Location:20 → 207
    cupin_OxOx; Oxalate oxidase (germin), cupin domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P94072.1

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