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hyccin [ Arabidopsis thaliana (thale cress) ]

Gene ID: 832229, updated on 18-Sep-2024

Summary

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Official Full Name
hyccin
Primary source
TAIR:AT5G21050
Locus tag
AT5G21050
See related
Araport:AT5G21050
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T10F18.80; T10F18_80
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Genomic context

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Location:
chromosome: 5
Exon count:
1
Sequence:
Chromosome: 5; NC_003076.8 (7147890..7148957)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene PAZ domain-containing protein / piwi domain-containing protein Neighboring gene F-box protein 2 Neighboring gene Glyceraldehyde-3-phosphate dehydrogenase-like family protein Neighboring gene Fe(3+) dicitrate transport system permease Neighboring gene Uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A nanodomain-anchored scaffolding complex is required for the function and localization of phosphatidylinositol 4-kinase alpha in plants. Noack LC, et al. Plant Cell, 2022 Jan 20. PMID 34010411, Free PMC Article
  2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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NM_122113.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  
is_active_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
hyccin
NP_197604.1
  • LOCATED IN: chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Hyccin (InterPro:IPR018619); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64090.1); Has 206 Blast hits to 206 proteins in 60 species: Archae - 0; Bacteria - 0; Metazoa - 145; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    7147890..7148957
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_122113.1 → NP_197604.1  hyccin [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_197604.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UIL3, A0A654G2Y8, Q3E983
    Conserved Domains (1) summary
    pfam09790
    Location:58 → 329
    Hyccin
Nucleotide Protein
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