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Serine carboxypeptidase S28 family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 832349, updated on 18-Sep-2024

Summary

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Official Full Name
Serine carboxypeptidase S28 family protein
Primary source
TAIR:AT5G22860
Locus tag
AT5G22860
See related
Araport:AT5G22860
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MRN17.9; MRN17_9
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Genomic context

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Location:
chromosome: 5
Exon count:
8
Sequence:
Chromosome: 5; NC_003076.8 (7639076..7643170, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Protein kinase superfamily protein Neighboring gene Eukaryotic aspartyl protease family protein Neighboring gene ncRNA Neighboring gene Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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NM_001343774.1
NM_001343775.1
NM_001343776.1
NM_001343777.1
NM_001343778.1
NM_001343779.1
NM_122191.3
NM_180728.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables serine-type exopeptidase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Serine carboxypeptidase S28 family protein
NP_001318624.1
  • Serine carboxypeptidase S28 family protein; FUNCTIONS IN: serine-type peptidase activity, peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S28 (InterPro:IPR008758); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT2G24280.1); Has 1206 Blast hits to 1180 proteins in 169 species: Archae - 0; Bacteria - 11; Metazoa - 595; Fungi - 183; Plants - 236; Viruses - 0; Other Eukaryotes - 181 (source: NCBI BLink).
NP_851059.1
  • Serine carboxypeptidase S28 family protein; FUNCTIONS IN: serine-type peptidase activity, peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S28 (InterPro:IPR008758); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT2G24280.1); Has 1224 Blast hits to 1198 proteins in 170 species: Archae - 0; Bacteria - 11; Metazoa - 605; Fungi - 185; Plants - 238; Viruses - 0; Other Eukaryotes - 185 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    7639076..7643170 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_180728.3 → NP_851059.1  Serine carboxypeptidase S28 family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_851059.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9Y6M9, A0A654G3I1, Q9FFC2
    Conserved Domains (1) summary
    cl21494
    Location:61 → 480
    Abhydrolase; alpha/beta hydrolases

  2. NM_001343775.1 → NP_001330608.1  Serine carboxypeptidase S28 family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BBB9, A0A5S9Y6M9

  3. NM_122191.3 → NP_197677.2  Serine carboxypeptidase S28 family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_197677.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9Y6M9, F4KBC9
    Conserved Domains (1) summary
    cl21494
    Location:61 → 439
    Abhydrolase; alpha/beta hydrolases

  4. NM_001343774.1 → NP_001318624.1  Serine carboxypeptidase S28 family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9Y6M9, F4KBC9

  5. NM_001343776.1 → NP_001330609.1  Serine carboxypeptidase S28 family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UD15, A0A1P8BBC5

  6. NM_001343778.1 → NP_001330607.1  Serine carboxypeptidase S28 family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UD15, A0A1P8BBC5

  7. NM_001343777.1 → NP_001330606.1  Serine carboxypeptidase S28 family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UD15, A0A1P8BBC5

  8. NM_001343779.1 → NP_001330605.1  Serine carboxypeptidase S28 family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UB63, A0A1P8BBB4
Nucleotide Protein
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