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Homeodomain-like transcriptional regulator [ Arabidopsis thaliana (thale cress) ]

Gene ID: 832430, updated on 18-Sep-2024

Summary

Official Full Name
Homeodomain-like transcriptional regulator
Primary source
TAIR:AT5G23650
Locus tag
AT5G23650
See related
Araport:AT5G23650
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MQM1.9; MQM1_9
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Genomic context

Location:
chromosome: 5
Exon count:
2
Sequence:
Chromosome: 5; NC_003076.8 (7969812..7971101)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene DYAD protein Neighboring gene phosphate deficiency response 2 Neighboring gene bidirectional sugar transporter SWEET12-like protein Neighboring gene ncRNA

General gene information

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within regulation of DNA-templated transcription TAS
Traceable Author Statement
more info
PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
 

General protein information

Preferred Names
Homeodomain-like transcriptional regulator
NP_197754.1
  • Homeodomain-like transcriptional regulator; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), SANT, eukarya (InterPro:IPR017884), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: Duplicated homeodomain-like superfamily protein (TAIR:AT5G08520.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    7969812..7971101
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_122270.2NP_197754.1  Homeodomain-like transcriptional regulator [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_197754.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UIP7, A0A5S9Y759, A0A654G3I5, Q9LT00
    Conserved Domains (2) summary
    cd00167
    Location:1256
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
    cl21498
    Location:117168
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...