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coiled-coil protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 832435, updated on 18-Sep-2024

Summary

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Official Full Name
coiled-coil protein
Primary source
TAIR:AT5G23700
Locus tag
AT5G23700
See related
Araport:AT5G23700
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MQM1.3; MQM1_3
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Genomic context

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Location:
chromosome: 5
Exon count:
17
Sequence:
Chromosome: 5; NC_003076.8 (7992776..7997509)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Sterile alpha motif (SAM) domain-containing protein Neighboring gene ncRNA Neighboring gene Polynucleotide adenylyltransferase family protein Neighboring gene DNA binding / DNA-directed RNA polymerase Neighboring gene dual specificity protein phosphatase family protein Neighboring gene Transducin/WD40 repeat-like superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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NM_122275.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in cytokinesis by cell plate formation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in Golgi apparatus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
coiled-coil protein
NP_197759.3
  • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48860.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    7992776..7997509
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001343819.1 → NP_001330555.1  coiled-coil protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BB67, A0A5S9Y8Y7, A0A654G420
    Conserved Domains (1) summary
    pfam09726
    Location:16 → 311
    Macoilin; Macoilin family

  2. NM_001343820.1 → NP_001330556.1  coiled-coil protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BB69, A0A5S9Y8Y7

  3. NM_122275.4 → NP_197759.3  coiled-coil protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_197759.3

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9Y8Y7, F4KE93
    Conserved Domains (1) summary
    TIGR02168
    Location:185 → 321
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
Nucleotide Protein
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