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Ypt/Rab-GAP domain of gyp1p superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 832510, updated on 18-Sep-2024

Summary

Official Full Name
Ypt/Rab-GAP domain of gyp1p superfamily protein
Primary source
TAIR:AT5G24390
Locus tag
AT5G24390
See related
Araport:AT5G24390
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
K16H17.10; K16H17_10
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Genomic context

Location:
chromosome: 5
Exon count:
5
Sequence:
Chromosome: 5; NC_003076.8 (8326607..8329499, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene inositol requiring 1-1 Neighboring gene Plant invertase/pectin methylesterase inhibitor superfamily protein Neighboring gene YELLOW STRIPE like 2 Neighboring gene NagB/RpiA/CoA transferase-like superfamily protein Neighboring gene 6-phosphogluconolactonase 4

General protein information

Preferred Names
Ypt/Rab-GAP domain of gyp1p superfamily protein
NP_197827.1
  • Ypt/Rab-GAP domain of gyp1p superfamily protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: Ypt/Rab-GAP domain of gyp1p superfamily protein (TAIR:AT3G49350.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    8326607..8329499 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_122347.4NP_197827.1  Ypt/Rab-GAP domain of gyp1p superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_197827.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654G3P7, Q67XX9, Q9FIN3
    Conserved Domains (1) summary
    smart00164
    Location:322482
    TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs