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CRY3 cryptochrome 3 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 832554, updated on 18-Sep-2024

Summary

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Official Symbol
CRY3
Official Full Name
cryptochrome 3
Primary source
TAIR:AT5G24850
Locus tag
AT5G24850
See related
Araport:AT5G24850
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
cryptochrome 3; F6A4.60; F6A4_60
Summary
Binds flavin adenine dinucleotide and DNA. It does not have photolyase activity, and it is likely to act as photoreceptor. Closely related to Synechocystis cryptochrome.
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Genomic context

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See CRY3 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
12
Sequence:
Chromosome: 5; NC_003076.8 (8535258..8538211, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene ncRNA Neighboring gene tRNA (guanine-N-7) methyltransferase Neighboring gene flowering promoting factor 1 Neighboring gene RING/U-box superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Recognition and repair of UV lesions in loop structures of duplex DNA by DASH-type cryptochrome. Pokorny R, et al. Proc Natl Acad Sci U S A, 2008 Dec 30. PMID 19074258, Free PMC Article
  2. Cryptochrome 3 from Arabidopsis thaliana: structural and functional analysis of its complex with a folate light antenna. Klar T, et al. J Mol Biol, 2007 Feb 23. PMID 17188299
  3. Crystal structure of cryptochrome 3 from Arabidopsis thaliana and its implications for photolyase activity. Huang Y, et al. Proc Natl Acad Sci U S A, 2006 Nov 21. PMID 17101984, Free PMC Article
  4. An Arabidopsis protein closely related to Synechocystis cryptochrome is targeted to organelles. Kleine T, et al. Plant J, 2003 Jul. PMID 12834405
  5. UV-B signaling pathways with different fluence-rate response profiles are distinguished in mature Arabidopsis leaf tissue by requirement for UVR8, HY5, and HYH. Brown BA, et al. Plant Physiol, 2008 Feb. PMID 18055587, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_122394.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
NOT enables DNA photolyase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables FMN binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables mRNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within photoreactive repair IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in photoreactive repair IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast IDA
Inferred from Direct Assay
more info
 PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in mitochondrion IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plastid HDA PubMed 

General protein information

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Preferred Names
cryptochrome 3
NP_568461.3
  • cryptochrome 3 (CRY3); FUNCTIONS IN: FMN binding, DNA binding, DNA photolyase activity; INVOLVED IN: DNA repair; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), DNA photolyase, N-terminal (InterPro:IPR006050), Cryptochrome, DASH (InterPro:IPR014133), DNA photolyase, FAD-binding/Cryptochrome, C-terminal (InterPro:IPR005101), Cryptochrome/DNA photolyase, class 1 (InterPro:IPR002081); BEST Arabidopsis thaliana protein match is: photolyase/blue-light receptor 2 (TAIR:AT2G47590.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    8535258..8538211 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_122394.4 → NP_568461.3  cryptochrome 3 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4KIJ6, Q84KJ5, Q8VZD8
    UniProtKB/TrEMBL
    A0A5S9Y6Z1, A0A654G456, A0A7G2FDT3
    Conserved Domains (1) summary
    TIGR02765
    Location:84 → 515
    crypto_DASH; cryptochrome, DASH family
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q84KJ5.2

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