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AslB, putative (DUF239) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 832664, updated on 18-Sep-2024

Summary

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Official Full Name
AslB, putative (DUF239)
Primary source
TAIR:AT5G25950
Locus tag
AT5G25950
See related
Araport:AT5G25950
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T1N24.4; T1N24_4
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Genomic context

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Location:
chromosome: 5
Exon count:
7
Sequence:
Chromosome: 5; NC_003076.8 (9057793..9059963, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene kinase family with leucine-rich repeat domain-containing protein Neighboring gene ncRNA Neighboring gene early nodulin-like protein Neighboring gene ncRNA Neighboring gene pseudo Neighboring gene AslB (DUF239)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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NM_122496.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
AslB, putative (DUF239)
NP_197967.2
  • Protein of Unknown Function (DUF239); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: Protein of Unknown Function (DUF239) (TAIR:AT5G25960.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    9057793..9059963 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_122496.2 → NP_197967.2  AslB, putative (DUF239) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_197967.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9Y9M3, A0A654G4G4, F4JYA0
    Conserved Domains (2) summary
    pfam03080
    Location:202 → 425
    DUF239; Domain of unknown function (DUF239)
    pfam14365
    Location:58 → 153
    DUF4409; Domain of unknown function (DUF4409)
Nucleotide Protein
Heading Accession and Version

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