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HDA2 histone deacetylase 2 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 832673, updated on 18-Sep-2024

Summary

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Official Symbol
HDA2
Official Full Name
histone deacetylase 2
Primary source
TAIR:AT5G26040
Locus tag
AT5G26040
See related
Araport:AT5G26040
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
HISTONE DEACETYLASE; histone deacetylase 2; T1N24.9; T1N24_9
Summary
Class III RPD3 type protein. Encodes HDA2, a member of the histone deacetylase family proteins.
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Genomic context

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See HDA2 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
12
Sequence:
Chromosome: 5; NC_003076.8 (9099152..9101682, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene ferrochelatase 1 Neighboring gene ncRNA Neighboring gene Plant self-incompatibility protein S1 family Neighboring gene Plant self-incompatibility protein S1 family

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Structure of Arabidopsis HISTONE DEACETYLASE15. Chen CY, et al. Plant Physiol, 2020 Nov. PMID 32878973, Free PMC Article
  2. Analysis of histone acetyltransferase and histone deacetylase families of Arabidopsis thaliana suggests functional diversification of chromatin modification among multicellular eukaryotes. Pandey R, et al. Nucleic Acids Res, 2002 Dec 1. PMID 12466527, Free PMC Article
  3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_122505.4
NM_180747.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables histone deacetylase activity IEA
Inferred from Electronic Annotation
more info
  
enables histone deacetylase activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables zinc ion binding ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
histone deacetylase 2
NP_568480.2
  • histone deacetylase 2 (HDA2); CONTAINS InterPro DOMAIN/s: Histone deacetylase superfamily (InterPro:IPR000286); BEST Arabidopsis thaliana protein match is: histone deacetylase 6 (TAIR:AT5G63110.1); Has 8459 Blast hits to 8281 proteins in 1419 species: Archae - 213; Bacteria - 3093; Metazoa - 1435; Fungi - 484; Plants - 429; Viruses - 0; Other Eukaryotes - 2805 (source: NCBI BLink).
NP_851078.1
  • histone deacetylase 2 (HDA2); CONTAINS InterPro DOMAIN/s: Histone deacetylase superfamily (InterPro:IPR000286); BEST Arabidopsis thaliana protein match is: histone deacetylase 9 (TAIR:AT3G44680.1); Has 5195 Blast hits to 5176 proteins in 1086 species: Archae - 142; Bacteria - 1739; Metazoa - 784; Fungi - 275; Plants - 317; Viruses - 0; Other Eukaryotes - 1938 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    9099152..9101682 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_122505.4 → NP_568480.2  histone deacetylase 2 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_568480.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q3E940, Q8LRK7, Q944K3, Q9XH00
    UniProtKB/TrEMBL
    A0A178UN60, A0A5S9Y797, A0A654G4H5
    Conserved Domains (1) summary
    cd09993
    Location:93 → 376
    HDAC_classIV; Histone deacetylase class IV also known as histone deacetylase 11

  2. NM_180747.2 → NP_851078.1  histone deacetylase 2 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_851078.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9Y797, A0A654G4H5
    Conserved Domains (1) summary
    cd09993
    Location:93 → 348
    HDAC_classIV; Histone deacetylase class IV also known as histone deacetylase 11
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q944K3.2

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