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ASD2 alpha-L-arabinofuranosidase 2 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 832681, updated on 18-Sep-2024

Summary

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Official Symbol
ASD2
Official Full Name
alpha-L-arabinofuranosidase 2
Primary source
TAIR:AT5G26120
Locus tag
AT5G26120
See related
Araport:AT5G26120
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
alpha-L-arabinofuranosidase 2; ARABIDOPSIS THALIANA ALPHA-L-ARABINOFURANOSIDASE 2; ATASD2; T1N24.13; T1N24_13
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Genomic context

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See ASD2 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
18
Sequence:
Chromosome: 5; NC_003076.8 (9121675..9125967, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Protein kinase superfamily protein Neighboring gene ncRNA Neighboring gene CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein Neighboring gene Putative lysine decarboxylase family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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Markers

NM_122513.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables alpha-L-arabinofuranosidase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in L-arabinose metabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
alpha-L-arabinofuranosidase 2
NP_197984.2
  • alpha-L-arabinofuranosidase 2 (ASD2); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, alpha-N-arabinofuranosidase activity; INVOLVED IN: L-arabinose metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: sepal, carpel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Alpha-L-arabinofuranosidase, C-terminal (InterPro:IPR010720), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: alpha-L-arabinofuranosidase 1 (TAIR:AT3G10740.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    9121675..9125967 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_122513.4 → NP_197984.2  alpha-L-arabinofuranosidase 2 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_197984.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8VZR2, Q9XH04
    UniProtKB/TrEMBL
    A0A5S9Y7U9, A0A654G479
    Conserved Domains (1) summary
    smart00813
    Location:463 → 646
    Alpha-L-AF_C; Alpha-L-arabinofuranosidase C-terminus
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8VZR2.1

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