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D111/G-patch domain-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 832729, updated on 18-Sep-2024

Summary

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Official Full Name
D111/G-patch domain-containing protein
Primary source
TAIR:AT5G26610
Locus tag
AT5G26610
See related
Araport:AT5G26610
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 5
Exon count:
8
Sequence:
Chromosome: 5; NC_003076.8 (9375089..9377168)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene Pyridoxal phosphate (PLP)-dependent transferases superfamily protein Neighboring gene pseudo

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Translational Regulation of Metabolic Dynamics during Effector-Triggered Immunity. Yoo H, et al. Mol Plant, 2020 Jan 6. PMID 31568832, Free PMC Article
  2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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NM_001203474.2
NM_180554.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within defense response IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
D111/G-patch domain-containing protein
NP_001190403.1
  • D111/G-patch domain-containing protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087), D111/G-patch (InterPro:IPR000467), Zinc finger, double-stranded RNA binding (InterPro:IPR022755); BEST Arabidopsis thaliana protein match is: suppressor of abi3-5 (TAIR:AT3G54230.1).
NP_850884.1
  • D111/G-patch domain-containing protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087), D111/G-patch (InterPro:IPR000467), Zinc finger, double-stranded RNA binding (InterPro:IPR022755); BEST Arabidopsis thaliana protein match is: suppressor of abi3-5 (TAIR:AT3G54230.1); Has 2550 Blast hits to 2366 proteins in 262 species: Archae - 4; Bacteria - 51; Metazoa - 1383; Fungi - 291; Plants - 280; Viruses - 14; Other Eukaryotes - 527 (source: NCBI BLink).
NP_850885.1
  • D111/G-patch domain-containing protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087), D111/G-patch (InterPro:IPR000467), Zinc finger, double-stranded RNA binding (InterPro:IPR022755); BEST Arabidopsis thaliana protein match is: suppressor of abi3-5 (TAIR:AT3G54230.1); Has 2550 Blast hits to 2366 proteins in 262 species: Archae - 4; Bacteria - 51; Metazoa - 1383; Fungi - 291; Plants - 280; Viruses - 14; Other Eukaryotes - 527 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    9375089..9377168
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_180553.3 → NP_850884.1  D111/G-patch domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_850884.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UKJ5, A0A5S9Y7F8, A0A654G4B6, Q147M4
    Conserved Domains (2) summary
    smart00443
    Location:64 → 108
    G_patch; glycine rich nucleic binding domain
    pfam12171
    Location:161 → 188
    zf-C2H2_jaz; Zinc-finger double-stranded RNA-binding

  2. NM_180554.2 → NP_850885.1  D111/G-patch domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_850885.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UKJ5, A0A5S9Y7F8, A0A654G4B6, Q147M4
    Conserved Domains (2) summary
    smart00443
    Location:64 → 108
    G_patch; glycine rich nucleic binding domain
    pfam12171
    Location:161 → 188
    zf-C2H2_jaz; Zinc-finger double-stranded RNA-binding

  3. NM_001203474.2 → NP_001190403.1  D111/G-patch domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001190403.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UKJ5, A0A5S9Y7F8, A0A654G4B6, Q147M4
    Conserved Domains (2) summary
    smart00443
    Location:64 → 108
    G_patch; glycine rich nucleic binding domain
    pfam12171
    Location:161 → 188
    zf-C2H2_jaz; Zinc-finger double-stranded RNA-binding
Nucleotide Protein
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