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Tudor/PWWP/MBT superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 832827, updated on 18-Sep-2024

Summary

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Official Full Name
Tudor/PWWP/MBT superfamily protein
Primary source
TAIR:AT5G27650
Locus tag
AT5G27650
See related
Araport:AT5G27650
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T1G16.4
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Genomic context

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Location:
chromosome: 5
Exon count:
2
Sequence:
Chromosome: 5; NC_003076.8 (9785407..9789354)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene cyclin H;1 Neighboring gene acyl-CoA binding protein 5 Neighboring gene translation initiation factor 3B1 Neighboring gene ncRNA Neighboring gene Trypsin family protein with PDZ domain-containing protein Neighboring gene histone H2A 7

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Arabidopsis PWWP domain proteins mediate H3K27 trimethylation on FLC and regulate flowering time. Zhou JX, et al. J Integr Plant Biol, 2018 May. PMID 29314758
  2. Arabidopsis thaliana MSI4/FVE associates with members of a novel family of plant specific PWWP/RRM domain proteins. Kenzior A, et al. Plant Mol Biol, 2015 Mar. PMID 25600937
  3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_122647.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within epigenetic regulation of gene expression IGI
Inferred from Genetic Interaction
more info
 PubMed 
involved_in epigenetic regulation of gene expression IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in regulation of DNA-templated transcription IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in regulation of photoperiodism, flowering IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
part_of ESC/E(Z) complex IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Tudor/PWWP/MBT superfamily protein
NP_198117.2
  • Tudor/PWWP/MBT superfamily protein; CONTAINS InterPro DOMAIN/s: PWWP (InterPro:IPR000313); BEST Arabidopsis thaliana protein match is: Tudor/PWWP/MBT superfamily protein (TAIR:AT3G05430.1); Has 6717 Blast hits to 4764 proteins in 372 species: Archae - 18; Bacteria - 431; Metazoa - 2974; Fungi - 702; Plants - 445; Viruses - 136; Other Eukaryotes - 2011 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    9785407..9789354
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_122647.3 → NP_198117.2  Tudor/PWWP/MBT superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_198117.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    C0SVR2, F4K4D6
    UniProtKB/TrEMBL
    A0A5S9Y7X0
    Conserved Domains (1) summary
    cd05162
    Location:171 → 257
    PWWP; The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins ...
Nucleotide Protein
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