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Hypoxia-responsive family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 832838, updated on 18-Sep-2024

Summary

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Official Full Name
Hypoxia-responsive family protein
Primary source
TAIR:AT5G27760
Locus tag
AT5G27760
See related
Araport:AT5G27760
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T1G16.90; T1G16_90
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Genomic context

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Location:
chromosome: 5
Exon count:
3
Sequence:
Chromosome: 5; NC_003076.8 (9830251..9831872)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene heparan-alpha-glucosaminide N-acetyltransferase-like protein (DUF1624) Neighboring gene ATPase family associated with various cellular activities (AAA) Neighboring gene F-box/FBD-like domains containing protein Neighboring gene ncRNA Neighboring gene miscRNA Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification of proteins that interact with catalytically active calcium-dependent protein kinases from Arabidopsis. Uno Y, et al. Mol Genet Genomics, 2009 Apr. PMID 19130088
  2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_122658.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Hypoxia-responsive family protein
NP_198128.1
  • Hypoxia-responsive family protein; CONTAINS InterPro DOMAIN/s: Hypoxia induced protein, conserved region (InterPro:IPR007667); BEST Arabidopsis thaliana protein match is: Hypoxia-responsive family protein (TAIR:AT3G05550.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    9830251..9831872
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001344038.1 → NP_001331125.1  Hypoxia-responsive family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BCY5
    Conserved Domains (1) summary
    pfam04588
    Location:19 → 54
    HIG_1_N; Hypoxia induced protein conserved region

  2. NM_122658.4 → NP_198128.1  Hypoxia-responsive family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_198128.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UJ07, Q8LG60
Nucleotide Protein
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