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ARM repeat superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 832867, updated on 18-Sep-2024

Summary

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Official Full Name
ARM repeat superfamily protein
Primary source
TAIR:AT5G27970
Locus tag
AT5G27970
See related
Araport:AT5G27970
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F15F15.40; F15F15_40
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Genomic context

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Location:
chromosome: 5
Exon count:
45
Sequence:
Chromosome: 5; NC_003076.8 (10004411..10015746)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene AGAMOUS-like 90 Neighboring gene pseudo Neighboring gene Seed maturation protein Neighboring gene Pre-rRNA-processing protein TSR2, conserved region Neighboring gene Polyketide cyclase/dehydrase and lipid transport superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

NM_001203485.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in plasma membrane ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
ARM repeat superfamily protein
NP_001190414.1
  • ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024), Protein of unknown function DUF1981, SEC7 associated (InterPro:IPR015403); BEST Arabidopsis thaliana protein match is: HOPM interactor 7 (TAIR:AT3G43300.1).
NP_198149.2
  • ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024), Protein of unknown function DUF1981, SEC7 associated (InterPro:IPR015403); BEST Arabidopsis thaliana protein match is: HOPM interactor 7 (TAIR:AT3G43300.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    10004411..10015746
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001344048.1 → NP_001332568.1  ARM repeat superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UMR6, A0A1P8BHE6

  2. NM_001344049.1 → NP_001332567.1  ARM repeat superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BHE1, A0A5S9Y7W2

  3. NM_001344050.1 → NP_001332566.1  ARM repeat superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BHC3, A0A5S9Y7W2

  4. NM_122680.3 → NP_198149.2  ARM repeat superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_198149.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9Y7W2, F4K5S1
    Conserved Domains (4) summary
    pfam09324
    Location:813 → 879
    DUF1981; Domain of unknown function (DUF1981)
    pfam12783
    Location:241 → 392
    Sec7_N; Guanine nucleotide exchange factor in Golgi transport N-terminal
    pfam16206
    Location:883 → 1597
    Mon2_C; C-terminal region of Mon2 protein
    pfam16213
    Location:3 → 182
    DCB; Dimerization and cyclophilin-binding domain of Mon2

  5. NM_001203485.1 → NP_001190414.1  ARM repeat superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001190414.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654G4P3, F4K5S0
    Conserved Domains (4) summary
    pfam09324
    Location:815 → 881
    DUF1981; Domain of unknown function (DUF1981)
    pfam12783
    Location:228 → 379
    Sec7_N; Guanine nucleotide exchange factor in Golgi transport N-terminal
    pfam16206
    Location:885 → 1601
    Mon2_C; C-terminal region of Mon2 protein
    pfam16213
    Location:3 → 169
    DCB; Dimerization and cyclophilin-binding domain of Mon2
Nucleotide Protein
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