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DNA-binding family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 832956, updated on 18-Sep-2024

Summary

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Official Full Name
DNA-binding family protein
Primary source
TAIR:AT5G28590
Locus tag
AT5G28590
See related
Araport:AT5G28590
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T10I18.50; T10I18_50
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Genomic context

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Location:
chromosome: 5
Exon count:
5
Sequence:
Chromosome: 5; NC_003076.8 (10579446..10581559, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene pseudo Neighboring gene pseudo Neighboring gene pseudo

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
  2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
DNA-binding family protein
NP_198211.1
  • DNA-binding family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175); BEST Arabidopsis thaliana protein match is: AT hook motif DNA-binding family protein (TAIR:AT3G04590.2); Has 713 Blast hits to 708 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 711; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    10579446..10581559 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_122742.1 → NP_198211.1  DNA-binding family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_198211.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654G511, F4K8J6
    Conserved Domains (1) summary
    pfam03479
    Location:33 → 121
    DUF296; Domain of unknown function (DUF296)
Nucleotide Protein
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