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PHYC phytochrome C [ Arabidopsis thaliana (thale cress) ]

Gene ID: 833570, updated on 18-Sep-2024

Summary

Official Symbol
PHYC
Official Full Name
phytochrome C
Primary source
TAIR:AT5G35840
Locus tag
AT5G35840
See related
Araport:AT5G35840
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MIK22.15; MIK22_15; phytochrome C; PHYTOCHROME C
Summary
Encodes the apoprotein of phytochrome;one of a family of photoreceptors that modulate plant growth and development.
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Genomic context

See PHYC in Genome Data Viewer
Location:
chromosome: 5
Exon count:
3
Sequence:
Chromosome: 5; NC_003076.8 (14007812..14011848)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene Ankyrin repeat family protein Neighboring gene pseudo Neighboring gene uncharacterized protein

Bibliography

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

NM_122975.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables protein histidine kinase activity ISS
Inferred from Sequence or Structural Similarity
more info
 
enables protein homodimerization activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in detection of visible light IEA
Inferred from Electronic Annotation
more info
 
involved_in red, far-red light phototransduction IEA
Inferred from Electronic Annotation
more info
 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
 

General protein information

Preferred Names
phytochrome C
NP_198433.1
  • phytochrome C (PHYC); FUNCTIONS IN: protein histidine kinase activity; INVOLVED IN: in 8 processes; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PAC motif (InterPro:IPR001610), Phytochrome, central region (InterPro:IPR013515), Signal transduction histidine kinase, core (InterPro:IPR005467), PAS fold (InterPro:IPR013767), PAS (InterPro:IPR000014), Phytochrome chromophore attachment domain (InterPro:IPR016132), ATPase-like, ATP-binding domain (InterPro:IPR003594), PAS fold-2 (InterPro:IPR013654), Phytochrome A/B/C/D/E (InterPro:IPR012129), Phytochrome (InterPro:IPR001294), Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain (InterPro:IPR003661), Phytochrome chromophore binding site (InterPro:IPR013516), GAF (InterPro:IPR003018); BEST Arabidopsis thaliana protein match is: phytochrome A (TAIR:AT1G09570.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    14007812..14011848
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_122975.3NP_198433.1  phytochrome C [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_198433.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P14714
    UniProtKB/TrEMBL
    A0A5S9Y8G7, G4WU78, G4WU80, Q6TLJ1
    Conserved Domains (6) summary
    smart00065
    Location:217403
    GAF; Domain present in phytochromes and cGMP-specific phosphodiesterases
    cd00130
    Location:615721
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam00360
    Location:411580
    PHY; Phytochrome region
    pfam00989
    Location:606721
    PAS; PAS fold
    pfam02518
    Location:9941110
    HATPase_c; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
    pfam08446
    Location:65180
    PAS_2; PAS fold