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HCF109 high chlorophyll fluorescent 109 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 833614, updated on 18-Sep-2024

Summary

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Official Symbol
HCF109
Official Full Name
high chlorophyll fluorescent 109
Primary source
TAIR:AT5G36170
Locus tag
AT5G36170
See related
Araport:AT5G36170
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATPRFB; high chlorophyll fluorescent 109; MAB16.12; MAB16_12; PEPTIDE RELEASE FACTOR 2
Summary
Required for normal processing of polycistronic plastidial transcripts
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Genomic context

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See HCF109 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
7
Sequence:
Chromosome: 5; NC_003076.8 (14235835..14238072, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Tyrosine transaminase family protein Neighboring gene serine carboxypeptidase-like 1 Neighboring gene miscRNA Neighboring gene F-box protein interaction domain protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A peptide chain release factor 2 affects the stability of UGA-containing transcripts in Arabidopsis chloroplasts. Meurer J, et al. Plant Cell, 2002 Dec. PMID 12468741, Free PMC Article
  2. A nuclear mutant of Arabidopsis with impaired stability on distinct transcripts of the plastid psbB, psbD/C, ndhH, and ndhC operons. Meurer J, et al. Plant Cell, 1996 Jul. PMID 8768377, Free PMC Article
  3. AT_CHLORO, a comprehensive chloroplast proteome database with subplastidial localization and curated information on envelope proteins. Ferro M, et al. Mol Cell Proteomics, 2010 Jun. PMID 20061580, Free PMC Article
  4. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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NM_001344128.1
NM_123008.3
NM_180765.2
NM_180766.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables translation release factor activity IEA
Inferred from Electronic Annotation
more info
  
enables translation release factor activity, codon specific IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within RNA processing IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within plastid organization IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in translational termination IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within translational termination IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast IDA
Inferred from Direct Assay
more info
 PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in chloroplast stroma HDA PubMed 

General protein information

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Preferred Names
high chlorophyll fluorescent 109
NP_198466.2
  • high chlorophyll fluorescent 109 (HCF109); FUNCTIONS IN: translation release factor activity, codon specific, translation release factor activity; INVOLVED IN: translational termination, plastid organization, RNA processing; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Class I peptide chain release factor (InterPro:IPR000352), Peptide chain release factor 2 (InterPro:IPR004374), Peptide chain release factor (InterPro:IPR005139); BEST Arabidopsis thaliana protein match is: Peptide chain release factor 2 (TAIR:AT1G56350.1); Has 16243 Blast hits to 16243 proteins in 2786 species: Archae - 5; Bacteria - 10390; Metazoa - 230; Fungi - 206; Plants - 192; Viruses - 0; Other Eukaryotes - 5220 (source: NCBI BLink).
NP_851096.1
  • high chlorophyll fluorescent 109 (HCF109); FUNCTIONS IN: translation release factor activity, codon specific, translation release factor activity; INVOLVED IN: translational termination, plastid organization, RNA processing; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Class I peptide chain release factor (InterPro:IPR000352), Peptide chain release factor 2 (InterPro:IPR004374), Peptide chain release factor (InterPro:IPR005139); BEST Arabidopsis thaliana protein match is: Peptide chain release factor 2 (TAIR:AT1G56350.1); Has 17252 Blast hits to 17250 proteins in 2824 species: Archae - 5; Bacteria - 10710; Metazoa - 293; Fungi - 251; Plants - 224; Viruses - 14; Other Eukaryotes - 5755 (source: NCBI BLink).
NP_851097.1
  • high chlorophyll fluorescent 109 (HCF109); FUNCTIONS IN: translation release factor activity, codon specific, translation release factor activity; INVOLVED IN: translational termination, plastid organization, RNA processing; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Class I peptide chain release factor (InterPro:IPR000352), Peptide chain release factor 2 (InterPro:IPR004374), Peptide chain release factor (InterPro:IPR005139); BEST Arabidopsis thaliana protein match is: Peptide chain release factor 2 (TAIR:AT1G56350.1); Has 17253 Blast hits to 17251 proteins in 2824 species: Archae - 5; Bacteria - 10708; Metazoa - 294; Fungi - 253; Plants - 224; Viruses - 14; Other Eukaryotes - 5755 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    14235835..14238072 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_180765.2 → NP_851096.1  high chlorophyll fluorescent 109 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_851096.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9C5B2, Q9LVY0
    UniProtKB/TrEMBL
    A0A178UGY5, A0A5S9Y8F4
    Conserved Domains (1) summary
    PRK00578
    Location:82 → 445
    prfB; peptide chain release factor 2; Validated

  2. NM_123008.3 → NP_198466.2  high chlorophyll fluorescent 109 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_198466.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4K2X9
    Conserved Domains (2) summary
    pfam00472
    Location:312 → 356
    RF-1; RF-1 domain
    pfam03462
    Location:114 → 299
    PCRF; PCRF domain

  3. NM_180766.1 → NP_851097.1  high chlorophyll fluorescent 109 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_851097.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UH07, A0A5S9Y8F4
    Conserved Domains (3) summary
    PRK00578
    Location:81 → 444
    prfB; peptide chain release factor 2; Validated
    pfam00472
    Location:311 → 415
    RF-1; RF-1 domain
    pfam03462
    Location:113 → 298
    PCRF; PCRF domain

  4. NM_001344128.1 → NP_001332421.1  high chlorophyll fluorescent 109 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BGW0
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LVY0.1

Gene LinkOut

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