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RING/FYVE/PHD zinc finger superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 833632, updated on 18-Sep-2024

Summary

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Official Full Name
RING/FYVE/PHD zinc finger superfamily protein
Primary source
TAIR:AT5G36670
Locus tag
AT5G36670
See related
Araport:AT5G36670
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F24C7.4; F24C7_4
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Genomic context

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Location:
chromosome: 5
Exon count:
9
Sequence:
Chromosome: 5; NC_003076.8 (14401030..14406730)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ECA1 gametogenesis related family protein Neighboring gene pseudo Neighboring gene Pol-like polyprotein/retrotransposon, putative (DUF239) Neighboring gene pseudo

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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NM_001344142.1
NM_123024.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
RING/FYVE/PHD zinc finger superfamily protein
NP_568537.1
  • RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: A.T hook-like (InterPro:IPR020478), AT hook, DNA-binding motif (InterPro:IPR017956), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (TAIR:AT5G36740.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    14401030..14406730
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001344139.1 → NP_001332122.1  RING/FYVE/PHD zinc finger superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UIG4, A0A1P8BG30, A0A384KZK2
    Conserved Domains (2) summary
    cd15567
    Location:653 → 692
    PHD4_NSD; PHD finger 4 found in nuclear receptor-binding SET domain-containing (NSD) proteins
    pfam16135
    Location:575 → 626
    Jas; TPL-binding domain in jasmonate signalling

  2. NM_001344140.1 → NP_001332123.1  RING/FYVE/PHD zinc finger superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BFX4, Q9LHT5

  3. NM_001344141.1 → NP_001332120.1  RING/FYVE/PHD zinc finger superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BG27, A0A654G5W9

  4. NM_123024.2 → NP_568537.1  RING/FYVE/PHD zinc finger superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_568537.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654G5W9, F4K4G6
    Conserved Domains (2) summary
    cd15567
    Location:653 → 692
    PHD4_NSD; PHD finger 4 found in nuclear receptor-binding SET domain-containing (NSD) proteins
    pfam16135
    Location:538 → 612
    Jas; TPL-binding domain in jasmonate signalling

  5. NM_001344142.1 → NP_001332121.1  RING/FYVE/PHD zinc finger superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BG27, A0A654G5W9
Nucleotide Protein
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