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EXPA25 expansin A25 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 833926, updated on 18-Sep-2024

Summary

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Official Symbol
EXPA25
Official Full Name
expansin A25
Primary source
TAIR:AT5G39300
Locus tag
AT5G39300
See related
Araport:AT5G39300
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATEXP25; ATEXPA25; ATHEXP ALPHA 1.18; EXP25; EXPANSIN 25; expansin A25; K3K3.150; K3K3_150
Summary
member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)
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Genomic context

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See EXPA25 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
2
Sequence:
Chromosome: 5; NC_003076.8 (15737366..15738479, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene expansin A23 Neighboring gene expansin-A25 protein Neighboring gene expansin A24 Neighboring gene UDP-glucose 6-dehydrogenase family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Expansins: ever-expanding numbers and functions. Lee Y, et al. Curr Opin Plant Biol, 2001 Dec. PMID 11641069
  2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within plant-type cell wall loosening NAS
Non-traceable Author Statement
more info
 PubMed 
involved_in plant-type cell wall organization IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within unidimensional cell growth NAS
Non-traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
expansin A25
NP_198746.2
  • expansin A25 (EXPA25); INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: extracellular region; CONTAINS InterPro DOMAIN/s: Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Pollen allergen/expansin, C-terminal (InterPro:IPR007117), Barwin-related endoglucanase (InterPro:IPR009009), Expansin (InterPro:IPR002963), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112); BEST Arabidopsis thaliana protein match is: expansin A23 (TAIR:AT5G39280.1); Has 2135 Blast hits to 2132 proteins in 157 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 30; Plants - 2067; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    15737366..15738479 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_123292.2 → NP_198746.2  expansin A25 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4KED9, Q9FL77
    UniProtKB/TrEMBL
    A0A178UJY9, A0A5S9Y9H9, A0A654G6D5
    Conserved Domains (1) summary
    PLN00050
    Location:50 → 273
    PLN00050; expansin A; Provisional
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FL77.2

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