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RWP1 HXXXD-type acyl-transferase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 834106, updated on 18-Sep-2024

Summary

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Official Symbol
RWP1
Official Full Name
HXXXD-type acyl-transferase family protein
Primary source
TAIR:AT5G41040
Locus tag
AT5G41040
See related
Araport:AT5G41040
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
aliphatic suberin feruloyl-transferase; ASFT; HHT; hydroxycinnamoyl- CoA:ω-hydroxyacid O-hydroxycinnamoyltransferase; MEE6.11; MEE6_11; REDUCED LEVELS OF WALL-BOUND PHENOLICS 1
Summary
Encodes a feruloyl-CoA transferase required for suberin synthesis. Has feruloyl-CoA-dependent feruloyl transferase activity towards substrates with a primary alcohol.
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Genomic context

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See RWP1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
4
Sequence:
Chromosome: 5; NC_003076.8 (16431304..16433305)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene myb family transcription factor Neighboring gene uncharacterized protein Neighboring gene TCP family transcription factor Neighboring gene Pollen Ole e 1 allergen and extensin family protein Neighboring gene miscRNA Neighboring gene DHHC-type zinc finger family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A hydroxycinnamoyltransferase responsible for synthesizing suberin aromatics in Arabidopsis. Gou JY, et al. Proc Natl Acad Sci U S A, 2009 Nov 3. PMID 19846769, Free PMC Article
  2. Identification of an Arabidopsis feruloyl-coenzyme A transferase required for suberin synthesis. Molina I, et al. Plant Physiol, 2009 Nov. PMID 19759341, Free PMC Article
  3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The formation of aromatic suberin in Arabidopsis, primarily in seed and root tissues, depends on a member of the acyl-CoA dependent acyltransferase superfamily of enzymes encoded by At5g41040. [HHT]
    Title: A hydroxycinnamoyltransferase responsible for synthesizing suberin aromatics in Arabidopsis.
  2. ASFT is a feruloyl transferase involved in suberin biosynthesis.
    Title: Identification of an Arabidopsis feruloyl-coenzyme A transferase required for suberin synthesis.
Submit: New GeneRIF Correction

Pathways from PubChem

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General gene information

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Homology

NM_123469.2
NM_180780.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables hydroxycinnamoyltransferase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables omega-hydroxypalmitate O-sinapoyl transferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within cell wall pectin biosynthetic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within suberin biosynthetic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
HXXXD-type acyl-transferase family protein
NP_568587.2
  • HXXXD-type acyl-transferase family protein; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: HXXXD-type acyl-transferase family protein (TAIR:AT5G63560.1); Has 2973 Blast hits to 2952 proteins in 200 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 233; Plants - 2730; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
NP_851111.1
  • HXXXD-type acyl-transferase family protein; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: HXXXD-type acyl-transferase family protein (TAIR:AT5G63560.1); Has 2970 Blast hits to 2949 proteins in 200 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 233; Plants - 2727; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    16431304..16433305
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_180780.2 → NP_851111.1  HXXXD-type acyl-transferase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_851111.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q94CD1, Q9FLM5
    UniProtKB/TrEMBL
    A0A178UGL4, A0A5S9YAF1
    Conserved Domains (1) summary
    PLN02481
    Location:24 → 457
    PLN02481; Omega-hydroxypalmitate O-feruloyl transferase

  2. NM_123469.2 → NP_568587.2  HXXXD-type acyl-transferase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_568587.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4JWW6
    Conserved Domains (2) summary
    PLN02481
    Location:8 → 441
    PLN02481; Omega-hydroxypalmitate O-feruloyl transferase
    pfam02458
    Location:14 → 438
    Transferase; Transferase family
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q94CD1.1

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