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hydroxyproline-rich glycoprotein family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 834112, updated on 18-Sep-2024

Summary

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Official Full Name
hydroxyproline-rich glycoprotein family protein
Primary source
TAIR:AT5G41100
Locus tag
AT5G41100
See related
Araport:AT5G41100
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MEE6.17; MEE6_17
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Genomic context

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Location:
chromosome: 5
Exon count:
10
Sequence:
Chromosome: 5; NC_003076.8 (16447185..16450909)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene PLC-like phosphodiesterases superfamily protein Neighboring gene NAC domain containing protein 95 Neighboring gene meiosis chromosome segregation family protein Neighboring gene uncharacterized protein Neighboring gene Esterase/lipase/thioesterase family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. Kim TW, et al. Plant Cell, 2023 Mar 15. PMID 36660928, Free PMC Article
  2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_123475.3
NM_180781.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
hydroxyproline-rich glycoprotein family protein
NP_198926.2
  • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT3G26910.2); Has 1497 Blast hits to 1191 proteins in 214 species: Archae - 4; Bacteria - 102; Metazoa - 485; Fungi - 316; Plants - 187; Viruses - 37; Other Eukaryotes - 366 (source: NCBI BLink).
NP_851112.1
  • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT3G26910.2); Has 1503 Blast hits to 1197 proteins in 220 species: Archae - 4; Bacteria - 108; Metazoa - 481; Fungi - 318; Plants - 186; Viruses - 39; Other Eukaryotes - 367 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    16447185..16450909
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_180781.2 → NP_851112.1  hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_851112.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UME8, A4FVS2, B9DG14
    Conserved Domains (2) summary
    cd07307
    Location:40 → 228
    BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature
    PHA03247
    Location:408 → 552
    PHA03247; large tegument protein UL36; Provisional

  2. NM_123475.3 → NP_198926.2  hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_198926.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178ULB7, A0A5S9Y9T5, A0A654G705, Q8GXK6
    Conserved Domains (2) summary
    cd07307
    Location:40 → 228
    BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature
    PHA03247
    Location:408 → 552
    PHA03247; large tegument protein UL36; Provisional
Nucleotide Protein
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