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ABCI21 P-loop containing nucleoside triphosphate hydrolases superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 834434, updated on 18-Sep-2024

Summary

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Official Symbol
ABCI21
Official Full Name
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Primary source
TAIR:AT5G44110
Locus tag
AT5G44110
See related
Araport:AT5G44110
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN; ATNAP2; ATP-binding cassette A21; ATPOP1; MLN1.3; MLN1_3; POP1
Summary
Encodes a member of the NAP subfamily of ABC transporters.
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Genomic context

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See ABCI21 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
6
Sequence:
Chromosome: 5; NC_003076.8 (17753959..17755768, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Calcium-binding EF-hand family protein Neighboring gene casein kinase I-like 7 Neighboring gene RmlC-like cupins superfamily protein Neighboring gene FASCICLIN-like arabinogalactan protein 13 precursor

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. RNase MRP RNA and RNase P activity in plants are associated with a Pop1p containing complex. Krehan M, et al. Nucleic Acids Res, 2012 Sep. PMID 22641852, Free PMC Article
  2. Non-intrinsic ATP-binding cassette proteins ABCI19, ABCI20 and ABCI21 modulate cytokinin response at the endoplasmic reticulum in Arabidopsis thaliana. Kim A, et al. Plant Cell Rep, 2020 Apr. PMID 32016506, Free PMC Article
  3. phyA dominates in transduction of red-light signals to rapidly responding genes at the initiation of Arabidopsis seedling de-etiolation. Tepperman JM, et al. Plant J, 2006 Dec. PMID 17076805
  4. The Arabidopsis thaliana ABC protein superfamily, a complete inventory. Sánchez-Fernández R, et al. J Biol Chem, 2001 Aug 10. PMID 11346655
  5. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Non-intrinsic ATP-binding cassette proteins ABCI19, ABCI20 and ABCI21 modulate cytokinin response at the endoplasmic reticulum in Arabidopsis thaliana.
    Title: Non-intrinsic ATP-binding cassette proteins ABCI19, ABCI20 and ABCI21 modulate cytokinin response at the endoplasmic reticulum in Arabidopsis thaliana.
  2. The results provide evidence that in plants, Pop1p is associated with MRP RNAs and with the catalytic subunit of RNase P, either separately or in a single large complex.
    Title: RNase MRP RNA and RNase P activity in plants are associated with a Pop1p containing complex.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001036931.1
NM_001085235.1
NM_001344534.1
NM_123778.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
  
enables transmembrane transporter activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within cellular response to sucrose stimulus IEP
Inferred from Expression Pattern
more info
  
acts_upstream_of_or_within response to far red light IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within response to red light IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IDA
Inferred from Direct Assay
more info
  
located_in plasma membrane ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
P-loop containing nucleoside triphosphate hydrolases superfamily protein
NP_001032008.1
  • POP1; CONTAINS InterPro DOMAIN/s: ABC transporter-like (InterPro:IPR003439); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G03905.1); Has 81880 Blast hits to 79997 proteins in 3150 species: Archae - 1252; Bacteria - 69791; Metazoa - 943; Fungi - 1057; Plants - 1111; Viruses - 2; Other Eukaryotes - 7724 (source: NCBI BLink).
NP_001078704.1
  • POP1; BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G03905.1); Has 9575 Blast hits to 9549 proteins in 2190 species: Archae - 96; Bacteria - 7682; Metazoa - 239; Fungi - 361; Plants - 280; Viruses - 2; Other Eukaryotes - 915 (source: NCBI BLink).
NP_199224.1
  • POP1; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G03905.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    17753959..17755768 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_123778.3 → NP_199224.1  P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_199224.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8LBC2, Q9XF19
    UniProtKB/TrEMBL
    A0A178U6I2, A0A5S9YD52, A0A7G2FFM3
    Conserved Domains (1) summary
    COG4586
    Location:31 → 236
    COG4586; ABC-type uncharacterized transport system, ATPase component [General function prediction only]

  2. NM_001085235.1 → NP_001078704.1  P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001078704.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A8MRG9
    Conserved Domains (1) summary
    cl21455
    Location:31 → 163
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

  3. NM_001036931.1 → NP_001032008.1  P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001032008.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4K8R9
    Conserved Domains (2) summary
    pfam13304
    Location:43 → 198
    AAA_21; AAA domain, putative AbiEii toxin, Type IV TA system
    cl21455
    Location:13 → 196
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

  4. NM_001344534.1 → NP_001332312.1  P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BGQ9
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9XF19.1

Gene LinkOut

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