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DNA glycosylase superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 834497, updated on 18-Sep-2024

Summary

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Official Full Name
DNA glycosylase superfamily protein
Primary source
TAIR:AT5G44680
Locus tag
AT5G44680
See related
Araport:AT5G44680
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
K23L20.1; K23L20_1
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Genomic context

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Location:
chromosome: 5
Exon count:
5
Sequence:
Chromosome: 5; NC_003076.8 (18023985..18026077, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene glycosyltransferase family protein (DUF23) Neighboring gene RING finger PFF0165c-like protein Neighboring gene Leucine-rich repeat transmembrane protein kinase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_123835.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-3-methyladenine glycosylase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in base-excision repair IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
DNA glycosylase superfamily protein
NP_199281.1
  • DNA glycosylase superfamily protein; FUNCTIONS IN: DNA-3-methyladenine glycosylase I activity, catalytic activity; INVOLVED IN: DNA repair, base-excision repair; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), Methyladenine glycosylase (InterPro:IPR005019); BEST Arabidopsis thaliana protein match is: DNA glycosylase superfamily protein (TAIR:AT3G12710.1); Has 3656 Blast hits to 3656 proteins in 1559 species: Archae - 10; Bacteria - 3140; Metazoa - 4; Fungi - 4; Plants - 168; Viruses - 0; Other Eukaryotes - 330 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    18023985..18026077 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_123835.4 → NP_199281.1  DNA glycosylase superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_199281.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UI06, Q8LBY6, Q9FIZ5
    Conserved Domains (1) summary
    pfam03352
    Location:172 → 344
    Adenine_glyco; Methyladenine glycosylase
Nucleotide Protein
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