U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

spastin, putative (Protein of unknown function, DUF599) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 834647, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Full Name
spastin, putative (Protein of unknown function, DUF599)
Primary source
TAIR:AT5G46060
Locus tag
AT5G46060
See related
Araport:AT5G46060
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MCL19.11; MCL19_11
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 5
Exon count:
2
Sequence:
Chromosome: 5; NC_003076.8 (18681326..18682708)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene transcription elongation factor-like protein Neighboring gene Major facilitator superfamily protein Neighboring gene peptide transporter 3 Neighboring gene Guanylate-binding family protein Neighboring gene Protein kinase superfamily protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help
NM_123974.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

Go to the top of the page Help
Preferred Names
spastin, putative (Protein of unknown function, DUF599)
NP_199418.1
  • Protein of unknown function, DUF599; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF599 (InterPro:IPR006747); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF599 (TAIR:AT5G24600.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    18681326..18682708
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_123974.3 → NP_199418.1  spastin, putative (Protein of unknown function, DUF599) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_199418.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UFX2, A0A5S9YBF0, A0A654G8Z5, Q9FNL6
    Conserved Domains (1) summary
    pfam04654
    Location:13 → 218
    DUF599; Protein of unknown function, DUF599
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools