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hypothetical protein (DUF581) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 834752, updated on 18-Sep-2024

Summary

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Official Full Name
hypothetical protein (DUF581)
Primary source
TAIR:AT5G47060
Locus tag
AT5G47060
See related
Araport:AT5G47060
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MQD22.20; MQD22_20
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Genomic context

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Location:
chromosome: 5
Exon count:
3
Sequence:
Chromosome: 5; NC_003076.8 (19116719..19118744)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene SBP (S-ribonuclease binding protein) family protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Protein kinase superfamily protein Neighboring gene low-molecular-weight cysteine-rich 20 Neighboring gene low-molecular-weight cysteine-rich 6

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. DUF581 is plant specific FCS-like zinc finger involved in protein-protein interaction. K MJ, et al. PLoS One, 2014. PMID 24901469, Free PMC Article
  2. Expression of Arabidopsis FCS-Like Zinc finger genes is differentially regulated by sugars, cellular energy level, and abiotic stress. Jamsheer K M, et al. Front Plant Sci, 2015. PMID 26442059, Free PMC Article
  3. The complex becomes more complex: protein-protein interactions of SnRK1 with DUF581 family proteins provide a framework for cell- and stimulus type-specific SnRK1 signaling in plants. Nietzsche M, et al. Front Plant Sci, 2014. PMID 24600465, Free PMC Article
  4. Integrative Analysis from the Epigenome to Translatome Uncovers Patterns of Dominant Nuclear Regulation during Transient Stress. Lee TA, et al. Plant Cell, 2019 Nov. PMID 31519798, Free PMC Article
  5. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001344706.1
NM_124077.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables kinase binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables phosphatase binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within cellular response to hypoxia HEP PubMed 
involved_in response to glucose IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in response to mannose IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in response to starvation IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in response to sucrose IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
hypothetical protein (DUF581)
NP_199517.1
  • Protein of unknown function (DUF581); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF581 (InterPro:IPR007650); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF581) (TAIR:AT4G17670.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    19116719..19118744
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_124077.5 → NP_199517.1  hypothetical protein (DUF581) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_199517.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A0A178U8H3, Q9FGQ9
    UniProtKB/TrEMBL
    A0A384KPG6, A0A5S9YC96
    Conserved Domains (1) summary
    pfam04570
    Location:87 → 138
    zf-FLZ; zinc-finger of the FCS-type, C2-C2

  2. NM_001344706.1 → NP_001330022.1  hypothetical protein (DUF581) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A0A178U8H3, Q9FGQ9
    UniProtKB/TrEMBL
    A0A384KPG6, A0A5S9YC96
    Conserved Domains (1) summary
    pfam04570
    Location:87 → 138
    zf-FLZ; zinc-finger of the FCS-type, C2-C2
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FGQ9.1

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