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prolamin-like protein (DUF1278) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 834874, updated on 18-Sep-2024

Summary

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Official Full Name
prolamin-like protein (DUF1278)
Primary source
TAIR:AT5G48210
Locus tag
AT5G48210
See related
Araport:AT5G48210
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MIF21.10; MIF21_10
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Genomic context

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Location:
chromosome: 5
Exon count:
1
Sequence:
Chromosome: 5; NC_003076.8 (19548414..19549141)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene glycosyltransferase family protein (DUF23) Neighboring gene uncharacterized protein Neighboring gene zinc ion binding protein Neighboring gene Aldolase-type TIM barrel family protein Neighboring gene acetoacetyl-CoA thiolase 2 Neighboring gene Rrp15p protein Neighboring gene B-box type zinc finger protein with CCT domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_124196.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
prolamin-like protein (DUF1278)
NP_568693.1
  • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: petal, leaf whorl, sepal, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1278 (InterPro:IPR010701); BEST Arabidopsis thaliana protein match is: ECA1 gametogenesis related family protein (TAIR:AT3G42565.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    19548414..19549141
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_124196.2 → NP_568693.1  prolamin-like protein (DUF1278) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_568693.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UGH9, Q9LUB3
    Conserved Domains (1) summary
    cl05275
    Location:7 → 97
    Prolamin_like; Prolamin-like
Nucleotide Protein
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