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Actin binding Calponin homology (CH) domain-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 834901, updated on 18-Sep-2024

Summary

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Official Full Name
Actin binding Calponin homology (CH) domain-containing protein
Primary source
TAIR:AT5G48460
Locus tag
AT5G48460
See related
Araport:AT5G48460
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 5
Exon count:
14
Sequence:
Chromosome: 5; NC_003076.8 (19636045..19639529, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Eukaryotic aspartyl protease family protein Neighboring gene FAD-dependent oxidoreductase family protein Neighboring gene ncRNA Neighboring gene SKU5 similar 3 Neighboring gene tRNA-Lys Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Structurally Plastic CH2 Domain Is Linked to Distinct Functions of Fimbrins/Plastins. Zhang R, et al. J Biol Chem, 2016 Aug 19. PMID 27261463, Free PMC Article
  2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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NM_124221.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables actin filament binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within actin filament bundle assembly IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Actin binding Calponin homology (CH) domain-containing protein
NP_199657.1
  • Actin binding Calponin homology (CH) domain-containing protein; FUNCTIONS IN: actin binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Actinin-type, actin-binding, conserved site (InterPro:IPR001589), Calponin-homology (InterPro:IPR016146), Calponin-like actin-binding (InterPro:IPR001715); BEST Arabidopsis thaliana protein match is: fimbrin-like protein 2 (TAIR:AT5G35700.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    19636045..19639529 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_124221.3 → NP_199657.1  Actin binding Calponin homology (CH) domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_199657.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O49971, O50064, Q67XH3
    UniProtKB/TrEMBL
    A0A5S9YC58, A0A654G939, A0A7G2FGP0
    Conserved Domains (1) summary
    COG5069
    Location:53 → 619
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O50064.1

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