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Cyclin family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 834921, updated on 18-Sep-2024

Summary

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Official Full Name
Cyclin family protein
Primary source
TAIR:AT5G48640
Locus tag
AT5G48640
See related
Araport:AT5G48640
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
K15N18.11; K15N18_11
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Genomic context

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Location:
chromosome: 5
Exon count:
8
Sequence:
Chromosome: 5; NC_003076.8 (19723388..19725748, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene myb-like protein X Neighboring gene Disease resistance protein (CC-NBS-LRR class) family Neighboring gene Cyclin family protein Neighboring gene Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein Neighboring gene RING/U-box superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. CycC1;1 negatively modulates ABA signaling by interacting with and inhibiting ABI5 during seed germination. Guo JX, et al. Plant Physiol, 2022 Nov 28. PMID 36173345, Free PMC Article
  2. CYCLIN-DEPENDENT KINASE8 differentially regulates plant immunity to fungal pathogens through kinase-dependent and -independent functions in Arabidopsis. Zhu Y, et al. Plant Cell, 2014 Oct. PMID 25281690, Free PMC Article
  3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001344788.1
NM_001344789.1
NM_001344790.1
NM_124240.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables cyclin-dependent protein serine/threonine kinase regulator activity IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Cyclin family protein
NP_199675.2
  • Cyclin family protein; CONTAINS InterPro DOMAIN/s: Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: Cyclin family protein (TAIR:AT5G48630.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    19723388..19725748 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001344787.1 → NP_001330774.1  Cyclin family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UGB4, A0A1P8BBV4
    Conserved Domains (2) summary
    cd20572
    Location:98 → 201
    CYCLIN_AtCycC_rpt2; second cyclin box found in Arabidopsis thaliana C-type cyclins (CycCs) and similar proteins
    cl40454
    Location:1 → 93
    CYCLIN_SF; Cyclin box fold superfamily

  2. NM_124240.3 → NP_199675.2  Cyclin family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_199675.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FJK6
    UniProtKB/TrEMBL
    A0A178UEG7, A0A5S9YC55, A0A654G975
    Conserved Domains (2) summary
    cd20571
    Location:35 → 141
    CYCLIN_AtCycC_rpt1; first cyclin box found in Arabidopsis thaliana C-type cyclins (CycCs) and similar proteins
    cd20572
    Location:146 → 249
    CYCLIN_AtCycC_rpt2; second cyclin box found in Arabidopsis thaliana C-type cyclins (CycCs) and similar proteins

  3. NM_001344788.1 → NP_001330775.1  Cyclin family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UGB4, A0A1P8BBV3

  4. NM_001344789.1 → NP_001330772.1  Cyclin family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UGB4, A0A1P8BBV3

  5. NM_001344790.1 → NP_001330773.1  Cyclin family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UGB4, A0A1P8BBV3
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FJK6.2

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