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transmembrane protein, putative (DUF1218) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 834992, updated on 18-Sep-2024

Summary

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Official Full Name
transmembrane protein, putative (DUF1218)
Primary source
TAIR:AT5G49320
Locus tag
AT5G49320
See related
Araport:AT5G49320
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
K21P3.22; K21P3_22
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Genomic context

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Location:
chromosome: 5
Exon count:
3
Sequence:
Chromosome: 5; NC_003076.8 (19994994..19996357, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene importin subunit alpha Neighboring gene ncRNA Neighboring gene importin alpha isoform 5 Neighboring gene myb domain protein 111 Neighboring gene TRICHOME BIREFRINGENCE-LIKE 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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NM_124309.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
transmembrane protein, putative (DUF1218)
NP_199743.1
  • Protein of unknown function (DUF1218); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1218 (InterPro:IPR009606); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    19994994..19996357 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_124309.4 → NP_199743.1  transmembrane protein, putative (DUF1218) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_199743.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9YCY8, A0A654G9Z4, Q9FJ08
    Conserved Domains (1) summary
    pfam06749
    Location:79 → 181
    DUF1218; Protein of unknown function (DUF1218)
Nucleotide Protein
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