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Signal recognition particle, SRP54 subunit protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 835010, updated on 18-Sep-2024

Summary

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Official Full Name
Signal recognition particle, SRP54 subunit protein
Primary source
TAIR:AT5G49500
Locus tag
AT5G49500
See related
Araport:AT5G49500
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
K6M13.4; K6M13_4
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Genomic context

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Location:
chromosome: 5
Exon count:
9
Sequence:
Chromosome: 5; NC_003076.8 (20077304..20080329, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene AGAMOUS-like 83 Neighboring gene prefoldin 3 Neighboring gene WRKY DNA-binding protein 48

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Proteomic profiling of tandem affinity purified 14-3-3 protein complexes in Arabidopsis thaliana. Chang IF, et al. Proteomics, 2009 Jun. PMID 19452453, Free PMC Article
  2. Identification of ubiquitinated proteins in Arabidopsis. Manzano C, et al. Plant Mol Biol, 2008 Sep. PMID 18535787
  3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_124327.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables 7S RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in SRP-dependent cotranslational protein targeting to membrane IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
part_of signal recognition particle IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Signal recognition particle, SRP54 subunit protein
NP_199761.1
  • Signal recognition particle, SRP54 subunit protein; FUNCTIONS IN: 7S RNA binding, protein binding, mRNA binding, GTP binding; INVOLVED IN: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition, SRP-dependent cotranslational protein targeting to membrane; LOCATED IN: signal recognition particle, signal recognition particle, endoplasmic reticulum targeting; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Signal recognition particle, SRP54 subunit, helical bundle (InterPro:IPR013822), Signal recognition particle, SRP54 subunit, M-domain (InterPro:IPR004125), Signal recognition particle, SRP54 subunit, GTPase (InterPro:IPR000897), Signal recognition particle, SRP54 subunit (InterPro:IPR006325); BEST Arabidopsis thaliana protein match is: Signal recognition particle, SRP54 subunit protein (TAIR:AT1G48900.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    20077304..20080329 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001344848.1 → NP_001332231.1  Signal recognition particle, SRP54 subunit protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UH44, A0A1P8BGB2

  2. NM_124327.2 → NP_199761.1  Signal recognition particle, SRP54 subunit protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_199761.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P49966
    UniProtKB/TrEMBL
    A0A7G2FF11
    Conserved Domains (4) summary
    TIGR01425
    Location:2 → 430
    SRP54_euk; signal recognition particle protein SRP54
    pfam00448
    Location:102 → 296
    SRP54; SRP54-type protein, GTPase domain
    pfam02881
    Location:6 → 83
    SRP54_N; SRP54-type protein, helical bundle domain
    pfam02978
    Location:329 → 426
    SRP_SPB; Signal peptide binding domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P49966.2

Gene LinkOut

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